Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MCRIP2P1-201ENST00000394346 511 ntBASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 RPS2P55-201ENST00000397318 883 ntBASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 AC107956.1-201ENST00000494359 873 ntBASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 AC012618.2-201ENST00000428058 849 ntBASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 CDV3P1-201ENST00000471403 739 ntBASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 AC133561.5-201ENST00000635547 218 ntBASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 MIR2861-201ENST00000636310 90 ntBASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SH3RF1Q7Z6J0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 KRT18P68-201ENST00000392293 1000 ntBASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 POM121L13P-201ENST00000422362 380 ntBASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SH3RF1Q7Z6J0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SH3RF1Q7Z6J0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
SH3RF1Q7Z6J0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms