Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSPG4Q6UVK1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 KSR1P1-201ENST00000446298 240 ntBASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.55■□□□□ 0.24
CSPG4Q6UVK1 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 GPALPP1-207ENST00000611650 899 ntBASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CSPG4Q6UVK1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 CRYGFP-201ENST00000418459 633 ntBASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 AC242852.2-201ENST00000615738 1807 ntBASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSPG4Q6UVK1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms