Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PTBP1P-201ENST00000554374 1601 ntBASIC14.45□□□□□ -0.1
COL7A1Q02388 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
COL7A1Q02388 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC14.45□□□□□ -0.1
COL7A1Q02388 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.45□□□□□ -0.1
COL7A1Q02388 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.45□□□□□ -0.1
COL7A1Q02388 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC14.45□□□□□ -0.1
COL7A1Q02388 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC14.45□□□□□ -0.1
COL7A1Q02388 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC14.44□□□□□ -0.1
COL7A1Q02388 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.44□□□□□ -0.1
COL7A1Q02388 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.44□□□□□ -0.1
COL7A1Q02388 GPALPP1-207ENST00000611650 899 ntBASIC14.44□□□□□ -0.1
COL7A1Q02388 AL121956.5-201ENST00000625261 221 ntBASIC14.44□□□□□ -0.1
COL7A1Q02388 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 AL390719.1-204ENST00000412397 1219 ntBASIC14.44□□□□□ -0.1
COL7A1Q02388 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC14.44□□□□□ -0.1
COL7A1Q02388 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC14.44□□□□□ -0.1
COL7A1Q02388 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.44□□□□□ -0.1
COL7A1Q02388 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC14.44□□□□□ -0.1
COL7A1Q02388 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC14.44□□□□□ -0.1
COL7A1Q02388 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.44□□□□□ -0.1
COL7A1Q02388 AC069148.1-201ENST00000608741 768 ntBASIC14.44□□□□□ -0.1
COL7A1Q02388 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL7A1Q02388 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL7A1Q02388 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC14.43□□□□□ -0.1
COL7A1Q02388 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC14.43□□□□□ -0.1
COL7A1Q02388 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL7A1Q02388 AC117947.1-201ENST00000427448 529 ntBASIC14.43□□□□□ -0.1
COL7A1Q02388 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.43□□□□□ -0.1
COL7A1Q02388 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
COL7A1Q02388 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.43□□□□□ -0.1
COL7A1Q02388 AL121906.2-201ENST00000621597 723 ntBASIC14.43□□□□□ -0.1
COL7A1Q02388 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC14.43□□□□□ -0.1
COL7A1Q02388 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC14.43□□□□□ -0.1
COL7A1Q02388 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL7A1Q02388 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC14.43□□□□□ -0.1
COL7A1Q02388 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
COL7A1Q02388 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL7A1Q02388 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL7A1Q02388 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL7A1Q02388 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.43□□□□□ -0.1
COL7A1Q02388 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC14.43□□□□□ -0.1
COL7A1Q02388 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC14.43□□□□□ -0.1
COL7A1Q02388 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL7A1Q02388 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL7A1Q02388 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL7A1Q02388 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC14.42□□□□□ -0.1
COL7A1Q02388 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL7A1Q02388 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL7A1Q02388 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC14.42□□□□□ -0.1
COL7A1Q02388 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC14.42□□□□□ -0.1
COL7A1Q02388 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
COL7A1Q02388 AC246785.2-201ENST00000432512 513 ntBASIC14.42□□□□□ -0.1
COL7A1Q02388 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.42□□□□□ -0.1
COL7A1Q02388 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC14.42□□□□□ -0.1
COL7A1Q02388 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL7A1Q02388 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
COL7A1Q02388 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.42□□□□□ -0.1
COL7A1Q02388 AL445675.2-201ENST00000620291 557 ntBASIC14.42□□□□□ -0.1
COL7A1Q02388 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL7A1Q02388 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL7A1Q02388 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL7A1Q02388 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.41□□□□□ -0.1
COL7A1Q02388 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL7A1Q02388 PVRIG2P-201ENST00000435460 978 ntBASIC14.41□□□□□ -0.1
COL7A1Q02388 FDX1P1-201ENST00000449115 551 ntBASIC14.41□□□□□ -0.1
COL7A1Q02388 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 AC083849.1-201ENST00000615227 514 ntBASIC14.41□□□□□ -0.1
COL7A1Q02388 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms