Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.54■□□□□ 0.72
YBX1P67809 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.54■□□□□ 0.72
YBX1P67809 AC083880.1-201ENST00000608266 535 ntBASIC19.54■□□□□ 0.72
YBX1P67809 MYC-209ENST00000641252 345 ntBASIC19.54■□□□□ 0.72
YBX1P67809 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
YBX1P67809 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
YBX1P67809 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
YBX1P67809 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
YBX1P67809 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 AC125437.2-201ENST00000625180 2167 ntBASIC19.53■□□□□ 0.72
YBX1P67809 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
YBX1P67809 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
YBX1P67809 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
YBX1P67809 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.53■□□□□ 0.72
YBX1P67809 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 SMG8-203ENST00000578922 2178 ntBASIC19.52■□□□□ 0.72
YBX1P67809 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
YBX1P67809 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
YBX1P67809 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.52■□□□□ 0.72
YBX1P67809 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.52■□□□□ 0.72
YBX1P67809 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.52■□□□□ 0.72
YBX1P67809 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.52■□□□□ 0.72
YBX1P67809 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
YBX1P67809 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
YBX1P67809 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.52■□□□□ 0.72
YBX1P67809 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
YBX1P67809 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
YBX1P67809 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
YBX1P67809 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
YBX1P67809 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.51■□□□□ 0.71
YBX1P67809 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
YBX1P67809 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 PGM5P4-201ENST00000421970 445 ntBASIC19.51■□□□□ 0.71
YBX1P67809 AC073210.2-201ENST00000430369 194 ntBASIC19.51■□□□□ 0.71
YBX1P67809 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
YBX1P67809 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.51■□□□□ 0.71
YBX1P67809 AC133041.1-202ENST00000642053 222 ntBASIC19.51■□□□□ 0.71
YBX1P67809 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.51■□□□□ 0.71
YBX1P67809 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.51■□□□□ 0.71
YBX1P67809 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.51■□□□□ 0.71
YBX1P67809 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
YBX1P67809 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.51■□□□□ 0.71
YBX1P67809 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.51■□□□□ 0.71
YBX1P67809 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
YBX1P67809 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.51■□□□□ 0.71
YBX1P67809 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.5■□□□□ 0.71
YBX1P67809 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.5■□□□□ 0.71
YBX1P67809 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.5■□□□□ 0.71
YBX1P67809 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.5■□□□□ 0.71
YBX1P67809 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.5■□□□□ 0.71
YBX1P67809 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.5■□□□□ 0.71
YBX1P67809 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 C2orf69P4-201ENST00000565394 541 ntBASIC19.5■□□□□ 0.71
YBX1P67809 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.5■□□□□ 0.71
YBX1P67809 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.5■□□□□ 0.71
YBX1P67809 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 TCF3P1-201ENST00000423021 1937 ntBASIC19.5■□□□□ 0.71
YBX1P67809 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.5■□□□□ 0.71
YBX1P67809 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
YBX1P67809 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.49■□□□□ 0.71
YBX1P67809 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
YBX1P67809 AC092720.2-201ENST00000602388 1665 ntBASIC19.49■□□□□ 0.71
YBX1P67809 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
YBX1P67809 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
YBX1P67809 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.49■□□□□ 0.71
YBX1P67809 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.49■□□□□ 0.71
YBX1P67809 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.49■□□□□ 0.71
YBX1P67809 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
YBX1P67809 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms