Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIM2P55344 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIM2P55344 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIM2P55344 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIM2P55344 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.02■□□□□ 0.64
LIM2P55344 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.02■□□□□ 0.64
LIM2P55344 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.02■□□□□ 0.64
LIM2P55344 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIM2P55344 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIM2P55344 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
LIM2P55344 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LIM2P55344 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.01■□□□□ 0.63
LIM2P55344 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIM2P55344 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIM2P55344 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIM2P55344 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIM2P55344 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIM2P55344 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIM2P55344 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.01■□□□□ 0.63
LIM2P55344 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.01■□□□□ 0.63
LIM2P55344 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIM2P55344 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.01■□□□□ 0.63
LIM2P55344 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIM2P55344 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.01■□□□□ 0.63
LIM2P55344 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIM2P55344 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIM2P55344 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19■□□□□ 0.63
LIM2P55344 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19■□□□□ 0.63
LIM2P55344 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19■□□□□ 0.63
LIM2P55344 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LIM2P55344 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LIM2P55344 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19■□□□□ 0.63
LIM2P55344 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIM2P55344 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.99■□□□□ 0.63
LIM2P55344 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
LIM2P55344 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
LIM2P55344 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LIM2P55344 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.99■□□□□ 0.63
LIM2P55344 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.99■□□□□ 0.63
LIM2P55344 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.99■□□□□ 0.63
LIM2P55344 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.99■□□□□ 0.63
LIM2P55344 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIM2P55344 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIM2P55344 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 AC023632.3-201ENST00000521633 145 ntBASIC18.98■□□□□ 0.63
LIM2P55344 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.98■□□□□ 0.63
LIM2P55344 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.98■□□□□ 0.63
LIM2P55344 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIM2P55344 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
LIM2P55344 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.98■□□□□ 0.63
LIM2P55344 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.97■□□□□ 0.63
LIM2P55344 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
LIM2P55344 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIM2P55344 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIM2P55344 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.97■□□□□ 0.63
LIM2P55344 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.97■□□□□ 0.63
LIM2P55344 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms