Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RPS2P55-201ENST00000397318 883 ntBASIC21.42■■□□□ 1.02
VCPP55072 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 AC107956.1-201ENST00000494359 873 ntBASIC21.42■■□□□ 1.02
VCPP55072 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.42■■□□□ 1.02
VCPP55072 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.42■■□□□ 1.02
VCPP55072 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.42■■□□□ 1.02
VCPP55072 AC007225.1-201ENST00000566331 1836 ntBASIC21.42■■□□□ 1.02
VCPP55072 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.42■■□□□ 1.02
VCPP55072 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
VCPP55072 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.42■■□□□ 1.02
VCPP55072 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.42■■□□□ 1.02
VCPP55072 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
VCPP55072 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VCPP55072 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
VCPP55072 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCPP55072 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.41■■□□□ 1.02
VCPP55072 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCPP55072 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.41■■□□□ 1.02
VCPP55072 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VCPP55072 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
VCPP55072 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCPP55072 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.41■■□□□ 1.02
VCPP55072 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.41■■□□□ 1.02
VCPP55072 TMPOP1-202ENST00000424642 1267 ntBASIC21.41■■□□□ 1.02
VCPP55072 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VCPP55072 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.41■■□□□ 1.02
VCPP55072 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.41■■□□□ 1.02
VCPP55072 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.41■■□□□ 1.02
VCPP55072 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
VCPP55072 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.41■■□□□ 1.02
VCPP55072 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCPP55072 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCPP55072 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.41■■□□□ 1.02
VCPP55072 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.41■■□□□ 1.02
VCPP55072 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
VCPP55072 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
VCPP55072 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.4■■□□□ 1.02
VCPP55072 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
VCPP55072 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
VCPP55072 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.4■■□□□ 1.02
VCPP55072 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
VCPP55072 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.4■■□□□ 1.02
VCPP55072 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.4■■□□□ 1.02
VCPP55072 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
VCPP55072 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
VCPP55072 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCPP55072 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
VCPP55072 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCPP55072 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCPP55072 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCPP55072 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
VCPP55072 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCPP55072 AC027702.1-201ENST00000563810 1770 ntBASIC21.39■■□□□ 1.01
VCPP55072 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.39■■□□□ 1.01
VCPP55072 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
VCPP55072 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.39■■□□□ 1.01
VCPP55072 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.39■■□□□ 1.01
VCPP55072 RN7SL850P-201ENST00000579959 291 ntBASIC21.39■■□□□ 1.01
VCPP55072 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.39■■□□□ 1.01
VCPP55072 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.39■■□□□ 1.01
VCPP55072 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 AC092368.3-202ENST00000574180 1591 ntBASIC21.39■■□□□ 1.01
VCPP55072 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCPP55072 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.38■■□□□ 1.01
VCPP55072 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
VCPP55072 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.38■■□□□ 1.01
VCPP55072 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.38■■□□□ 1.01
VCPP55072 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.38■■□□□ 1.01
VCPP55072 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.38■■□□□ 1.01
VCPP55072 CDV3P1-201ENST00000471403 739 ntBASIC21.38■■□□□ 1.01
VCPP55072 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.38■■□□□ 1.01
VCPP55072 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VCPP55072 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.38■■□□□ 1.01
VCPP55072 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
VCPP55072 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms