Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC26.66■■□□□ 1.86
COL18A1P39060 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC26.66■■□□□ 1.86
COL18A1P39060 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL18A1P39060 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC26.66■■□□□ 1.86
COL18A1P39060 YBX1P10-201ENST00000444752 975 ntBASIC26.66■■□□□ 1.86
COL18A1P39060 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC26.66■■□□□ 1.86
COL18A1P39060 AP005242.2-201ENST00000580065 1175 ntBASIC26.66■■□□□ 1.86
COL18A1P39060 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC26.66■■□□□ 1.86
COL18A1P39060 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL18A1P39060 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
COL18A1P39060 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL18A1P39060 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL18A1P39060 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL18A1P39060 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC26.65■■□□□ 1.86
COL18A1P39060 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC26.65■■□□□ 1.86
COL18A1P39060 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL18A1P39060 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC26.65■■□□□ 1.86
COL18A1P39060 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC26.65■■□□□ 1.86
COL18A1P39060 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
COL18A1P39060 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
COL18A1P39060 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
COL18A1P39060 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC26.64■■□□□ 1.86
COL18A1P39060 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC26.64■■□□□ 1.86
COL18A1P39060 CALM3-202ENST00000391918 702 ntTSL 2 BASIC26.64■■□□□ 1.86
COL18A1P39060 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC26.64■■□□□ 1.86
COL18A1P39060 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC26.64■■□□□ 1.86
COL18A1P39060 MYC-208ENST00000641036 567 ntBASIC26.64■■□□□ 1.86
COL18A1P39060 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
COL18A1P39060 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
COL18A1P39060 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC26.64■■□□□ 1.85
COL18A1P39060 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
COL18A1P39060 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
COL18A1P39060 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
COL18A1P39060 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 AL024507.2-201ENST00000606070 2574 ntBASIC26.63■■□□□ 1.85
COL18A1P39060 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.63■■□□□ 1.85
COL18A1P39060 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC26.63■■□□□ 1.85
COL18A1P39060 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC26.63■■□□□ 1.85
COL18A1P39060 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC26.63■■□□□ 1.85
COL18A1P39060 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC26.63■■□□□ 1.85
COL18A1P39060 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC26.63■■□□□ 1.85
COL18A1P39060 AL137013.1-201ENST00000432946 1228 ntBASIC26.63■■□□□ 1.85
COL18A1P39060 AC011506.1-201ENST00000474329 610 ntBASIC26.63■■□□□ 1.85
COL18A1P39060 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC26.63■■□□□ 1.85
COL18A1P39060 AC022616.7-201ENST00000525383 220 ntBASIC26.63■■□□□ 1.85
COL18A1P39060 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL18A1P39060 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC26.63■■□□□ 1.85
COL18A1P39060 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
COL18A1P39060 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
COL18A1P39060 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC26.62■■□□□ 1.85
COL18A1P39060 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC26.62■■□□□ 1.85
COL18A1P39060 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL18A1P39060 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL18A1P39060 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.62■■□□□ 1.85
COL18A1P39060 ECEL1P2-202ENST00000465689 757 ntBASIC26.62■■□□□ 1.85
COL18A1P39060 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC26.62■■□□□ 1.85
COL18A1P39060 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC26.62■■□□□ 1.85
COL18A1P39060 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
COL18A1P39060 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
COL18A1P39060 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC26.62■■□□□ 1.85
COL18A1P39060 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC26.62■■□□□ 1.85
COL18A1P39060 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL18A1P39060 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC26.62■■□□□ 1.85
COL18A1P39060 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL18A1P39060 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
COL18A1P39060 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC26.61■■□□□ 1.85
COL18A1P39060 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL18A1P39060 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL18A1P39060 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
COL18A1P39060 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC26.61■■□□□ 1.85
COL18A1P39060 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC26.61■■□□□ 1.85
COL18A1P39060 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL18A1P39060 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
COL18A1P39060 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
COL18A1P39060 AL121603.2-201ENST00000557373 2117 ntBASIC26.61■■□□□ 1.85
COL18A1P39060 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL18A1P39060 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC26.61■■□□□ 1.85
COL18A1P39060 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
COL18A1P39060 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC26.61■■□□□ 1.85
COL18A1P39060 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL18A1P39060 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
COL18A1P39060 AL049796.1-201ENST00000565336 1766 ntBASIC26.6■■□□□ 1.85
COL18A1P39060 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
COL18A1P39060 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC26.6■■□□□ 1.85
COL18A1P39060 FSCN1P1-201ENST00000568912 1481 ntBASIC26.6■■□□□ 1.85
COL18A1P39060 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL18A1P39060 TSPY14P-201ENST00000303979 915 ntBASIC26.6■■□□□ 1.85
COL18A1P39060 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
COL18A1P39060 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
COL18A1P39060 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL18A1P39060 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC26.6■■□□□ 1.85
COL18A1P39060 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
COL18A1P39060 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL18A1P39060 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC26.59■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms