Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
CIITAP33076 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 KRT16P6-202ENST00000425692 1426 ntBASIC22.6■■□□□ 1.21
CIITAP33076 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
CIITAP33076 AC124283.5-201ENST00000624661 1809 ntBASIC22.6■■□□□ 1.21
CIITAP33076 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.6■■□□□ 1.21
CIITAP33076 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.6■■□□□ 1.21
CIITAP33076 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.6■■□□□ 1.21
CIITAP33076 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.6■■□□□ 1.21
CIITAP33076 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC22.6■■□□□ 1.21
CIITAP33076 IRX5-204ENST00000560154 879 ntTSL 5 BASIC22.6■■□□□ 1.21
CIITAP33076 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.6■■□□□ 1.21
CIITAP33076 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.6■■□□□ 1.21
CIITAP33076 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 AC092667.1-201ENST00000434301 2586 ntBASIC22.6■■□□□ 1.21
CIITAP33076 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CIITAP33076 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
CIITAP33076 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.59■■□□□ 1.21
CIITAP33076 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.59■■□□□ 1.21
CIITAP33076 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
CIITAP33076 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
CIITAP33076 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.59■■□□□ 1.21
CIITAP33076 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.59■■□□□ 1.21
CIITAP33076 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC22.59■■□□□ 1.21
CIITAP33076 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC22.59■■□□□ 1.21
CIITAP33076 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
CIITAP33076 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 AL121829.2-201ENST00000620908 328 ntBASIC22.59■■□□□ 1.21
CIITAP33076 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
CIITAP33076 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
CIITAP33076 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.59■■□□□ 1.21
CIITAP33076 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CIITAP33076 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.59■■□□□ 1.21
CIITAP33076 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC22.59■■□□□ 1.21
CIITAP33076 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CIITAP33076 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.58■■□□□ 1.21
CIITAP33076 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
CIITAP33076 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
CIITAP33076 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CIITAP33076 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CIITAP33076 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CIITAP33076 AC098590.1-201ENST00000468126 897 ntBASIC22.58■■□□□ 1.21
CIITAP33076 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.58■■□□□ 1.21
CIITAP33076 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.58■■□□□ 1.21
CIITAP33076 AL157384.1-201ENST00000445995 2473 ntBASIC22.58■■□□□ 1.21
CIITAP33076 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.58■■□□□ 1.2
CIITAP33076 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.2
CIITAP33076 CD37-204ENST00000535669 1674 ntTSL 2 BASIC22.58■■□□□ 1.2
CIITAP33076 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CIITAP33076 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CIITAP33076 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.2
CIITAP33076 LINC01006-201ENST00000333319 2292 ntBASIC22.57■■□□□ 1.2
CIITAP33076 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.57■■□□□ 1.2
CIITAP33076 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.57■■□□□ 1.2
CIITAP33076 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.57■■□□□ 1.2
CIITAP33076 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
CIITAP33076 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.57■■□□□ 1.2
CIITAP33076 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC22.57■■□□□ 1.2
CIITAP33076 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CIITAP33076 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.57■■□□□ 1.2
CIITAP33076 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.57■■□□□ 1.2
CIITAP33076 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
CIITAP33076 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CIITAP33076 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.56■■□□□ 1.2
CIITAP33076 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CIITAP33076 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.56■■□□□ 1.2
CIITAP33076 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms