Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
CLIP1P30622 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC31.91■■■□□ 2.7
CLIP1P30622 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
CLIP1P30622 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC31.91■■■□□ 2.7
CLIP1P30622 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CLIP1P30622 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CLIP1P30622 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
CLIP1P30622 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC31.9■■■□□ 2.7
CLIP1P30622 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 SMG8-203ENST00000578922 2178 ntBASIC31.9■■■□□ 2.7
CLIP1P30622 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC31.9■■■□□ 2.7
CLIP1P30622 REXO2-216ENST00000544196 452 ntTSL 3 BASIC31.9■■■□□ 2.7
CLIP1P30622 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC31.9■■■□□ 2.7
CLIP1P30622 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC31.9■■■□□ 2.7
CLIP1P30622 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC31.9■■■□□ 2.7
CLIP1P30622 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
CLIP1P30622 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC31.89■■■□□ 2.7
CLIP1P30622 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CLIP1P30622 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC31.89■■■□□ 2.7
CLIP1P30622 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CLIP1P30622 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CLIP1P30622 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC31.89■■■□□ 2.7
CLIP1P30622 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CLIP1P30622 GXYLT1P3-201ENST00000453058 1193 ntBASIC31.89■■■□□ 2.7
CLIP1P30622 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
CLIP1P30622 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC31.89■■■□□ 2.7
CLIP1P30622 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
CLIP1P30622 AC073314.1-201ENST00000568729 2216 ntBASIC31.89■■■□□ 2.69
CLIP1P30622 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.69
CLIP1P30622 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC31.88■■■□□ 2.69
CLIP1P30622 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC31.88■■■□□ 2.69
CLIP1P30622 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CLIP1P30622 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC31.88■■■□□ 2.69
CLIP1P30622 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CLIP1P30622 TK2-204ENST00000525974 1178 ntTSL 2 BASIC31.88■■■□□ 2.69
CLIP1P30622 AC233702.5-201ENST00000584107 538 ntBASIC31.88■■■□□ 2.69
CLIP1P30622 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CLIP1P30622 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC31.88■■■□□ 2.69
CLIP1P30622 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
CLIP1P30622 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
CLIP1P30622 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
CLIP1P30622 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC31.87■■■□□ 2.69
CLIP1P30622 PNN-205ENST00000556530 601 ntTSL 2 BASIC31.87■■■□□ 2.69
CLIP1P30622 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC31.87■■■□□ 2.69
CLIP1P30622 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC31.87■■■□□ 2.69
CLIP1P30622 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
CLIP1P30622 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC31.87■■■□□ 2.69
CLIP1P30622 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CLIP1P30622 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC31.86■■■□□ 2.69
CLIP1P30622 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CLIP1P30622 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC31.86■■■□□ 2.69
CLIP1P30622 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC31.86■■■□□ 2.69
CLIP1P30622 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC31.86■■■□□ 2.69
CLIP1P30622 PRKY-204ENST00000533551 1019 ntBASIC31.86■■■□□ 2.69
CLIP1P30622 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC31.86■■■□□ 2.69
CLIP1P30622 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC31.86■■■□□ 2.69
CLIP1P30622 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC31.86■■■□□ 2.69
CLIP1P30622 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
CLIP1P30622 AP005212.1-201ENST00000581547 1997 ntBASIC31.86■■■□□ 2.69
CLIP1P30622 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
CLIP1P30622 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
CLIP1P30622 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CLIP1P30622 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CLIP1P30622 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC31.85■■■□□ 2.69
CLIP1P30622 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CLIP1P30622 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CLIP1P30622 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC31.85■■■□□ 2.69
CLIP1P30622 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC31.85■■■□□ 2.69
CLIP1P30622 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CLIP1P30622 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
CLIP1P30622 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC31.84■■■□□ 2.69
CLIP1P30622 CALM3-202ENST00000391918 702 ntTSL 2 BASIC31.84■■■□□ 2.69
CLIP1P30622 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CLIP1P30622 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC31.84■■■□□ 2.69
CLIP1P30622 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC31.84■■■□□ 2.69
CLIP1P30622 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
CLIP1P30622 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CLIP1P30622 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
CLIP1P30622 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC31.84■■■□□ 2.69
CLIP1P30622 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC31.84■■■□□ 2.69
CLIP1P30622 AC020907.5-201ENST00000624372 1936 ntBASIC31.84■■■□□ 2.69
CLIP1P30622 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
CLIP1P30622 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
CLIP1P30622 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CLIP1P30622 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
CLIP1P30622 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
CLIP1P30622 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CLIP1P30622 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CLIP1P30622 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CLIP1P30622 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CLIP1P30622 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC31.83■■■□□ 2.69
CLIP1P30622 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC31.83■■■□□ 2.69
CLIP1P30622 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
CLIP1P30622 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms