Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A1P20908 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.36■□□□□ 0.69
COL5A1P20908 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A1P20908 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.36■□□□□ 0.69
COL5A1P20908 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.36■□□□□ 0.69
COL5A1P20908 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
COL5A1P20908 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A1P20908 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A1P20908 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A1P20908 NAPSB-206ENST00000562112 1266 ntBASIC19.36■□□□□ 0.69
COL5A1P20908 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A1P20908 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A1P20908 AC005363.2-201ENST00000618631 242 ntBASIC19.36■□□□□ 0.69
COL5A1P20908 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A1P20908 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
COL5A1P20908 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A1P20908 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
COL5A1P20908 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A1P20908 KRT18P22-201ENST00000402024 1347 ntBASIC19.35■□□□□ 0.69
COL5A1P20908 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.35■□□□□ 0.69
COL5A1P20908 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.35■□□□□ 0.69
COL5A1P20908 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.35■□□□□ 0.69
COL5A1P20908 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A1P20908 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A1P20908 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
COL5A1P20908 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A1P20908 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A1P20908 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL5A1P20908 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
COL5A1P20908 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A1P20908 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A1P20908 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A1P20908 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A1P20908 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A1P20908 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
COL5A1P20908 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.34■□□□□ 0.69
COL5A1P20908 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.34■□□□□ 0.69
COL5A1P20908 AL590326.2-201ENST00000625139 305 ntBASIC19.34■□□□□ 0.69
COL5A1P20908 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.34■□□□□ 0.69
COL5A1P20908 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL5A1P20908 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A1P20908 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A1P20908 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.33■□□□□ 0.69
COL5A1P20908 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A1P20908 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.33■□□□□ 0.69
COL5A1P20908 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A1P20908 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A1P20908 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
COL5A1P20908 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.33■□□□□ 0.69
COL5A1P20908 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL5A1P20908 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.33■□□□□ 0.69
COL5A1P20908 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.33■□□□□ 0.69
COL5A1P20908 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A1P20908 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A1P20908 AL024507.2-201ENST00000606070 2574 ntBASIC19.33■□□□□ 0.69
COL5A1P20908 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A1P20908 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
COL5A1P20908 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A1P20908 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.32■□□□□ 0.68
COL5A1P20908 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.32■□□□□ 0.68
COL5A1P20908 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.32■□□□□ 0.68
COL5A1P20908 DGCR10-201ENST00000609839 495 ntBASIC19.32■□□□□ 0.68
COL5A1P20908 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.32■□□□□ 0.68
COL5A1P20908 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL5A1P20908 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.32■□□□□ 0.68
COL5A1P20908 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
COL5A1P20908 FEM1AP4-201ENST00000443167 1987 ntBASIC19.32■□□□□ 0.68
COL5A1P20908 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A1P20908 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.32■□□□□ 0.68
COL5A1P20908 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.32■□□□□ 0.68
COL5A1P20908 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
COL5A1P20908 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms