Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL6A3P12111 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.09■□□□□ 0.97
COL6A3P12111 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
COL6A3P12111 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC21.09■□□□□ 0.97
COL6A3P12111 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.09■□□□□ 0.97
COL6A3P12111 AC079781.3-201ENST00000449110 356 ntBASIC21.09■□□□□ 0.97
COL6A3P12111 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.09■□□□□ 0.97
COL6A3P12111 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL6A3P12111 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A3P12111 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A3P12111 MIR1233-2-201ENST00000408138 82 ntBASIC21.09■□□□□ 0.97
COL6A3P12111 MIR1233-1-201ENST00000408722 82 ntBASIC21.09■□□□□ 0.97
COL6A3P12111 KRT18P38-201ENST00000449496 1282 ntBASIC21.09■□□□□ 0.97
COL6A3P12111 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A3P12111 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL6A3P12111 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A3P12111 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.09■□□□□ 0.97
COL6A3P12111 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL6A3P12111 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.09■□□□□ 0.97
COL6A3P12111 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A3P12111 CCR12P-201ENST00000446203 998 ntBASIC21.09■□□□□ 0.97
COL6A3P12111 RNA5SP419-201ENST00000515908 135 ntBASIC21.09■□□□□ 0.97
COL6A3P12111 IFNL4P1-201ENST00000607083 540 ntBASIC21.09■□□□□ 0.97
COL6A3P12111 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A3P12111 AC093323.1-202ENST00000635031 2045 ntBASIC21.08■□□□□ 0.97
COL6A3P12111 AC010542.4-201ENST00000563151 1910 ntBASIC21.08■□□□□ 0.97
COL6A3P12111 KRT8P8-201ENST00000434750 1448 ntBASIC21.08■□□□□ 0.97
COL6A3P12111 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
COL6A3P12111 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.08■□□□□ 0.97
COL6A3P12111 PRSS44-201ENST00000515154 1146 ntBASIC21.08■□□□□ 0.97
COL6A3P12111 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL6A3P12111 AC027796.2-201ENST00000575326 344 ntBASIC21.08■□□□□ 0.97
COL6A3P12111 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.08■□□□□ 0.97
COL6A3P12111 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
COL6A3P12111 BX640515.1-201ENST00000617215 977 ntBASIC21.08■□□□□ 0.97
COL6A3P12111 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
COL6A3P12111 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.08■□□□□ 0.97
COL6A3P12111 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL6A3P12111 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL6A3P12111 HLA-A-201ENST00000376802 1334 ntBASIC21.08■□□□□ 0.97
COL6A3P12111 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.08■□□□□ 0.97
COL6A3P12111 TSPY12P-201ENST00000421279 868 ntBASIC21.08■□□□□ 0.96
COL6A3P12111 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL6A3P12111 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL6A3P12111 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.08■□□□□ 0.96
COL6A3P12111 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL6A3P12111 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 AL136038.3-201ENST00000561909 1096 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.07■□□□□ 0.96
COL6A3P12111 AL445675.2-201ENST00000620291 557 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 AC092068.2-201ENST00000590491 1708 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.07■□□□□ 0.96
COL6A3P12111 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL6A3P12111 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 AC007663.1-201ENST00000438948 1240 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 AL139424.1-201ENST00000607572 797 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.07■□□□□ 0.96
COL6A3P12111 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.07■□□□□ 0.96
COL6A3P12111 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
COL6A3P12111 AC068473.5-201ENST00000616428 2072 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 AL662844.1-201ENST00000546340 181 ntBASIC21.07■□□□□ 0.96
COL6A3P12111 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC21.07■□□□□ 0.96
COL6A3P12111 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
COL6A3P12111 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A3P12111 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A3P12111 KRT18P1-202ENST00000452408 1331 ntBASIC21.06■□□□□ 0.96
COL6A3P12111 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A3P12111 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC21.06■□□□□ 0.96
COL6A3P12111 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A3P12111 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A3P12111 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
COL6A3P12111 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.06■□□□□ 0.96
COL6A3P12111 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.06■□□□□ 0.96
COL6A3P12111 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
COL6A3P12111 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A3P12111 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A3P12111 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A3P12111 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
COL6A3P12111 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COL6A3P12111 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.05■□□□□ 0.96
COL6A3P12111 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A3P12111 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A3P12111 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.05■□□□□ 0.96
COL6A3P12111 AC092329.2-201ENST00000598402 547 ntBASIC21.05■□□□□ 0.96
COL6A3P12111 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A3P12111 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.05■□□□□ 0.96
COL6A3P12111 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A3P12111 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A3P12111 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms