Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
COL6A2P12110 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A2P12110 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
COL6A2P12110 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
COL6A2P12110 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A2P12110 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.77■□□□□ 0.76
COL6A2P12110 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A2P12110 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A2P12110 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A2P12110 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A2P12110 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.77■□□□□ 0.75
COL6A2P12110 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A2P12110 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A2P12110 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A2P12110 KRT8P17-201ENST00000453110 1448 ntBASIC19.76■□□□□ 0.75
COL6A2P12110 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
COL6A2P12110 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A2P12110 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A2P12110 AC016405.3-201ENST00000607710 860 ntBASIC19.76■□□□□ 0.75
COL6A2P12110 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A2P12110 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.75■□□□□ 0.75
COL6A2P12110 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL6A2P12110 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A2P12110 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A2P12110 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A2P12110 MCRIP2P1-201ENST00000394346 511 ntBASIC19.75■□□□□ 0.75
COL6A2P12110 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.75■□□□□ 0.75
COL6A2P12110 AC034268.1-201ENST00000441047 882 ntBASIC19.75■□□□□ 0.75
COL6A2P12110 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL6A2P12110 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.75■□□□□ 0.75
COL6A2P12110 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.75■□□□□ 0.75
COL6A2P12110 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
COL6A2P12110 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.75■□□□□ 0.75
COL6A2P12110 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A2P12110 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A2P12110 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A2P12110 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A2P12110 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A2P12110 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.75■□□□□ 0.75
COL6A2P12110 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A2P12110 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A2P12110 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.75■□□□□ 0.75
COL6A2P12110 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A2P12110 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A2P12110 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A2P12110 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
COL6A2P12110 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.74■□□□□ 0.75
COL6A2P12110 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL6A2P12110 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A2P12110 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 KRT16P6-202ENST00000425692 1426 ntBASIC19.74■□□□□ 0.75
COL6A2P12110 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A2P12110 AC018445.3-201ENST00000624177 1945 ntBASIC19.74■□□□□ 0.75
COL6A2P12110 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL6A2P12110 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A2P12110 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A2P12110 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A2P12110 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.73■□□□□ 0.75
COL6A2P12110 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A2P12110 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A2P12110 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
COL6A2P12110 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
COL6A2P12110 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
COL6A2P12110 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
COL6A2P12110 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A2P12110 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A2P12110 AC005332.7-201ENST00000614046 2005 ntBASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms