Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
COL4A2P08572 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A2P08572 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A2P08572 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A2P08572 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL4A2P08572 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A2P08572 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 KRT18P22-201ENST00000402024 1347 ntBASIC20.33■□□□□ 0.85
COL4A2P08572 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL4A2P08572 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL4A2P08572 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A2P08572 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A2P08572 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A2P08572 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A2P08572 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A2P08572 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL4A2P08572 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A2P08572 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A2P08572 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A2P08572 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL4A2P08572 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A2P08572 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A2P08572 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A2P08572 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A2P08572 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.33■□□□□ 0.84
COL4A2P08572 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.33■□□□□ 0.84
COL4A2P08572 AC010203.1-204ENST00000548782 407 ntBASIC20.33■□□□□ 0.84
COL4A2P08572 AL031985.4-201ENST00000642138 673 ntBASIC20.33■□□□□ 0.84
COL4A2P08572 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
COL4A2P08572 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A2P08572 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A2P08572 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A2P08572 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A2P08572 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A2P08572 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.32■□□□□ 0.84
COL4A2P08572 B3GAT3P1-201ENST00000471720 806 ntBASIC20.32■□□□□ 0.84
COL4A2P08572 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A2P08572 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A2P08572 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A2P08572 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
COL4A2P08572 AL117328.2-201ENST00000624617 1940 ntBASIC20.32■□□□□ 0.84
COL4A2P08572 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A2P08572 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A2P08572 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.32■□□□□ 0.84
COL4A2P08572 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL4A2P08572 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A2P08572 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A2P08572 AL049796.1-201ENST00000565336 1766 ntBASIC20.31■□□□□ 0.84
COL4A2P08572 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A2P08572 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A2P08572 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A2P08572 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A2P08572 WWOX-216ENST00000569818 525 ntBASIC20.31■□□□□ 0.84
COL4A2P08572 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
COL4A2P08572 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A2P08572 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A2P08572 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A2P08572 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A2P08572 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A2P08572 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL4A2P08572 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A2P08572 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.3■□□□□ 0.84
COL4A2P08572 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A2P08572 NTF6B-201ENST00000591913 560 ntBASIC20.3■□□□□ 0.84
COL4A2P08572 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.3■□□□□ 0.84
COL4A2P08572 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A2P08572 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A2P08572 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.3■□□□□ 0.84
COL4A2P08572 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 AP005242.2-201ENST00000580065 1175 ntBASIC20.3■□□□□ 0.84
COL4A2P08572 AL445675.2-201ENST00000620291 557 ntBASIC20.3■□□□□ 0.84
COL4A2P08572 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A2P08572 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A2P08572 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL4A2P08572 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A2P08572 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL4A2P08572 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A2P08572 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A2P08572 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL4A2P08572 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A2P08572 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL4A2P08572 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A2P08572 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A2P08572 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A2P08572 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms