Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL3A1P02461 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC26.62■■□□□ 1.85
COL3A1P02461 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
COL3A1P02461 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
COL3A1P02461 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC26.61■■□□□ 1.85
COL3A1P02461 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL3A1P02461 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC26.61■■□□□ 1.85
COL3A1P02461 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL3A1P02461 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL3A1P02461 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC26.61■■□□□ 1.85
COL3A1P02461 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC26.61■■□□□ 1.85
COL3A1P02461 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
COL3A1P02461 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC26.6■■□□□ 1.85
COL3A1P02461 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC26.6■■□□□ 1.85
COL3A1P02461 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC26.6■■□□□ 1.85
COL3A1P02461 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC26.6■■□□□ 1.85
COL3A1P02461 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC26.6■■□□□ 1.85
COL3A1P02461 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC26.6■■□□□ 1.85
COL3A1P02461 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC26.6■■□□□ 1.85
COL3A1P02461 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
COL3A1P02461 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.6■■□□□ 1.85
COL3A1P02461 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC26.6■■□□□ 1.85
COL3A1P02461 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC26.6■■□□□ 1.85
COL3A1P02461 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
COL3A1P02461 AC116351.2-201ENST00000606540 1585 ntBASIC26.6■■□□□ 1.85
COL3A1P02461 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL3A1P02461 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL3A1P02461 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC26.59■■□□□ 1.85
COL3A1P02461 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL3A1P02461 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
COL3A1P02461 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC26.59■■□□□ 1.85
COL3A1P02461 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL3A1P02461 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC26.59■■□□□ 1.85
COL3A1P02461 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
COL3A1P02461 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
COL3A1P02461 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
COL3A1P02461 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL3A1P02461 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.59■■□□□ 1.85
COL3A1P02461 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.59■■□□□ 1.85
COL3A1P02461 EFS-203ENST00000429593 2610 ntTSL 2 BASIC26.59■■□□□ 1.85
COL3A1P02461 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC26.58■■□□□ 1.85
COL3A1P02461 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.58■■□□□ 1.85
COL3A1P02461 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC26.58■■□□□ 1.85
COL3A1P02461 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL3A1P02461 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL3A1P02461 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL3A1P02461 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL3A1P02461 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL3A1P02461 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC26.58■■□□□ 1.85
COL3A1P02461 FAM197Y4-202ENST00000622692 608 ntBASIC26.58■■□□□ 1.85
COL3A1P02461 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL3A1P02461 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
COL3A1P02461 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
COL3A1P02461 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC26.58■■□□□ 1.84
COL3A1P02461 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
COL3A1P02461 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL3A1P02461 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC26.57■■□□□ 1.84
COL3A1P02461 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
COL3A1P02461 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL3A1P02461 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC26.57■■□□□ 1.84
COL3A1P02461 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
COL3A1P02461 CALM3-202ENST00000391918 702 ntTSL 2 BASIC26.57■■□□□ 1.84
COL3A1P02461 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL3A1P02461 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC26.57■■□□□ 1.84
COL3A1P02461 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC26.57■■□□□ 1.84
COL3A1P02461 AC008550.1-201ENST00000511500 884 ntBASIC26.57■■□□□ 1.84
COL3A1P02461 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
COL3A1P02461 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
COL3A1P02461 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL3A1P02461 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL3A1P02461 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL3A1P02461 UBE2SP1-201ENST00000450587 669 ntBASIC26.56■■□□□ 1.84
COL3A1P02461 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.56■■□□□ 1.84
COL3A1P02461 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL3A1P02461 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL3A1P02461 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL3A1P02461 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC26.56■■□□□ 1.84
COL3A1P02461 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC26.56■■□□□ 1.84
COL3A1P02461 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL3A1P02461 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL3A1P02461 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 PNN-205ENST00000556530 601 ntTSL 2 BASIC26.55■■□□□ 1.84
COL3A1P02461 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC26.55■■□□□ 1.84
COL3A1P02461 AC092667.1-201ENST00000434301 2586 ntBASIC26.55■■□□□ 1.84
COL3A1P02461 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
COL3A1P02461 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms