Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PRKNO60260 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.65■□□□□ 0.58
PRKNO60260 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 ITM2C-210ENST00000620962 501 ntBASIC18.65■□□□□ 0.58
PRKNO60260 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
PRKNO60260 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
PRKNO60260 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.65■□□□□ 0.58
PRKNO60260 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
PRKNO60260 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKNO60260 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
PRKNO60260 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
PRKNO60260 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PRKNO60260 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.64■□□□□ 0.58
PRKNO60260 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PRKNO60260 PRORSD1P-201ENST00000295112 541 ntBASIC18.64■□□□□ 0.57
PRKNO60260 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.64■□□□□ 0.57
PRKNO60260 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.64■□□□□ 0.57
PRKNO60260 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.64■□□□□ 0.57
PRKNO60260 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PRKNO60260 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
PRKNO60260 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.64■□□□□ 0.57
PRKNO60260 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PRKNO60260 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.63■□□□□ 0.57
PRKNO60260 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PRKNO60260 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 AC128676.1-201ENST00000454392 318 ntBASIC18.63■□□□□ 0.57
PRKNO60260 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.63■□□□□ 0.57
PRKNO60260 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.63■□□□□ 0.57
PRKNO60260 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.63■□□□□ 0.57
PRKNO60260 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PRKNO60260 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.63■□□□□ 0.57
PRKNO60260 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.63■□□□□ 0.57
PRKNO60260 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.63■□□□□ 0.57
PRKNO60260 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.63■□□□□ 0.57
PRKNO60260 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PRKNO60260 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PRKNO60260 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 KRT18P29-201ENST00000397031 1267 ntBASIC18.62■□□□□ 0.57
PRKNO60260 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.62■□□□□ 0.57
PRKNO60260 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 AC233263.1-201ENST00000578059 224 ntBASIC18.62■□□□□ 0.57
PRKNO60260 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
PRKNO60260 AC073648.6-201ENST00000641589 218 ntBASIC18.62■□□□□ 0.57
PRKNO60260 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.62■□□□□ 0.57
PRKNO60260 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.62■□□□□ 0.57
PRKNO60260 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.62■□□□□ 0.57
PRKNO60260 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.62■□□□□ 0.57
PRKNO60260 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.62■□□□□ 0.57
PRKNO60260 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PRKNO60260 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms