Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.32■□□□□ 0.2
SSSCA1O60232 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
SSSCA1O60232 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.32■□□□□ 0.2
SSSCA1O60232 MFF-208ENST00000409616 1247 ntTSL 5 BASIC16.32■□□□□ 0.2
SSSCA1O60232 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.32■□□□□ 0.2
SSSCA1O60232 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
SSSCA1O60232 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 AICDA-202ENST00000537228 667 ntTSL 5 BASIC16.32■□□□□ 0.2
SSSCA1O60232 MIR4767-201ENST00000582827 78 ntBASIC16.32■□□□□ 0.2
SSSCA1O60232 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.32■□□□□ 0.2
SSSCA1O60232 AC008175.2-201ENST00000612840 297 ntBASIC16.32■□□□□ 0.2
SSSCA1O60232 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSSCA1O60232 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SSSCA1O60232 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.31■□□□□ 0.2
SSSCA1O60232 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.31■□□□□ 0.2
SSSCA1O60232 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.31■□□□□ 0.2
SSSCA1O60232 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SSSCA1O60232 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC16.31■□□□□ 0.2
SSSCA1O60232 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 AC245052.3-201ENST00000450182 901 ntBASIC16.31■□□□□ 0.2
SSSCA1O60232 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC16.31■□□□□ 0.2
SSSCA1O60232 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC16.31■□□□□ 0.2
SSSCA1O60232 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.31■□□□□ 0.2
SSSCA1O60232 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC16.31■□□□□ 0.2
SSSCA1O60232 RARRES2P11-201ENST00000635158 484 ntBASIC16.31■□□□□ 0.2
SSSCA1O60232 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SSSCA1O60232 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.31■□□□□ 0.2
SSSCA1O60232 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SSSCA1O60232 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SSSCA1O60232 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSSCA1O60232 TREX1-205ENST00000625293 1783 ntBASIC16.31■□□□□ 0.2
SSSCA1O60232 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SSSCA1O60232 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.3■□□□□ 0.2
SSSCA1O60232 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SSSCA1O60232 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC16.3■□□□□ 0.2
SSSCA1O60232 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC16.3■□□□□ 0.2
SSSCA1O60232 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC16.3■□□□□ 0.2
SSSCA1O60232 AL035685.1-201ENST00000636663 812 ntBASIC16.3■□□□□ 0.2
SSSCA1O60232 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.3■□□□□ 0.2
SSSCA1O60232 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.3■□□□□ 0.2
SSSCA1O60232 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.3■□□□□ 0.2
SSSCA1O60232 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SSSCA1O60232 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSSCA1O60232 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.29■□□□□ 0.2
SSSCA1O60232 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SSSCA1O60232 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.29■□□□□ 0.2
SSSCA1O60232 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
SSSCA1O60232 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
SSSCA1O60232 POU5F1P4-201ENST00000413175 1085 ntBASIC16.29■□□□□ 0.2
SSSCA1O60232 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.29■□□□□ 0.2
SSSCA1O60232 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSSCA1O60232 AC093503.3-201ENST00000624917 2352 ntBASIC16.29■□□□□ 0.2
SSSCA1O60232 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SSSCA1O60232 BX119927.1-201ENST00000636596 1552 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms