Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.09■□□□□ 0.49
SSX4O60224 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.09■□□□□ 0.49
SSX4O60224 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.09■□□□□ 0.49
SSX4O60224 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.09■□□□□ 0.49
SSX4O60224 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SSX4O60224 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.09■□□□□ 0.49
SSX4O60224 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.09■□□□□ 0.49
SSX4O60224 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.09■□□□□ 0.49
SSX4O60224 AL050303.2-201ENST00000619798 666 ntBASIC18.09■□□□□ 0.49
SSX4O60224 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
SSX4O60224 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
SSX4O60224 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.08■□□□□ 0.49
SSX4O60224 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
SSX4O60224 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
SSX4O60224 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.08■□□□□ 0.49
SSX4O60224 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX4O60224 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
SSX4O60224 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.08■□□□□ 0.48
SSX4O60224 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.08■□□□□ 0.48
SSX4O60224 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
SSX4O60224 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 AL158211.5-201ENST00000623583 2518 ntBASIC18.08■□□□□ 0.48
SSX4O60224 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SSX4O60224 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SSX4O60224 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX4O60224 OR7E47P-201ENST00000546390 1422 ntBASIC18.07■□□□□ 0.48
SSX4O60224 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.07■□□□□ 0.48
SSX4O60224 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX4O60224 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSX4O60224 ABHD17AP1-201ENST00000358206 933 ntBASIC18.07■□□□□ 0.48
SSX4O60224 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX4O60224 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
SSX4O60224 AC007613.1-201ENST00000572811 2597 ntBASIC18.07■□□□□ 0.48
SSX4O60224 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SSX4O60224 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX4O60224 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SSX4O60224 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX4O60224 AC005332.8-201ENST00000622750 2735 ntBASIC18.07■□□□□ 0.48
SSX4O60224 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.06■□□□□ 0.48
SSX4O60224 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX4O60224 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SSX4O60224 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX4O60224 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.06■□□□□ 0.48
SSX4O60224 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX4O60224 SLC29A4P1-201ENST00000398760 971 ntBASIC18.06■□□□□ 0.48
SSX4O60224 TSPY6P-201ENST00000448518 926 ntBASIC18.06■□□□□ 0.48
SSX4O60224 CD99P1-205ENST00000527459 561 ntBASIC18.06■□□□□ 0.48
SSX4O60224 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.06■□□□□ 0.48
SSX4O60224 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.06■□□□□ 0.48
SSX4O60224 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX4O60224 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.06■□□□□ 0.48
SSX4O60224 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX4O60224 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.06■□□□□ 0.48
SSX4O60224 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX4O60224 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.06■□□□□ 0.48
SSX4O60224 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SSX4O60224 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.05■□□□□ 0.48
SSX4O60224 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.05■□□□□ 0.48
SSX4O60224 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX4O60224 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.05■□□□□ 0.48
SSX4O60224 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.05■□□□□ 0.48
SSX4O60224 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms