Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 AC125437.2-201ENST00000625180 2167 ntBASIC16.11■□□□□ 0.17
HMGB3O15347 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB3O15347 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB3O15347 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
HMGB3O15347 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB3O15347 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB3O15347 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB3O15347 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB3O15347 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB3O15347 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HMGB3O15347 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB3O15347 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HMGB3O15347 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 AC239859.2-201ENST00000444165 318 ntBASIC16.1■□□□□ 0.17
HMGB3O15347 AK3-203ENST00000447596 705 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB3O15347 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGB3O15347 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
HMGB3O15347 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB3O15347 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 BX323043.1-201ENST00000641006 1765 ntBASIC16.1■□□□□ 0.17
HMGB3O15347 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGB3O15347 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB3O15347 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB3O15347 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HMGB3O15347 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HMGB3O15347 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 AC138969.2-201ENST00000532739 9932 ntBASIC16.09■□□□□ 0.17
HMGB3O15347 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HMGB3O15347 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGB3O15347 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB3O15347 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB3O15347 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC16.09■□□□□ 0.17
HMGB3O15347 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB3O15347 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGB3O15347 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
HMGB3O15347 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HMGB3O15347 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HMGB3O15347 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HMGB3O15347 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB3O15347 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
HMGB3O15347 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
HMGB3O15347 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB3O15347 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB3O15347 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
HMGB3O15347 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.08■□□□□ 0.17
HMGB3O15347 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
HMGB3O15347 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB3O15347 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HMGB3O15347 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB3O15347 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC16.08■□□□□ 0.16
HMGB3O15347 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms