Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.99■□□□□ 0.31
SDCBPO00560 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDCBPO00560 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SDCBPO00560 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.99■□□□□ 0.31
SDCBPO00560 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDCBPO00560 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.99■□□□□ 0.31
SDCBPO00560 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.99■□□□□ 0.31
SDCBPO00560 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDCBPO00560 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
SDCBPO00560 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDCBPO00560 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
SDCBPO00560 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC16.98■□□□□ 0.31
SDCBPO00560 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
SDCBPO00560 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.98■□□□□ 0.31
SDCBPO00560 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.98■□□□□ 0.31
SDCBPO00560 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.98■□□□□ 0.31
SDCBPO00560 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.98■□□□□ 0.31
SDCBPO00560 NTF6G-201ENST00000591094 616 ntBASIC16.98■□□□□ 0.31
SDCBPO00560 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.98■□□□□ 0.31
SDCBPO00560 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.98■□□□□ 0.31
SDCBPO00560 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SDCBPO00560 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SDCBPO00560 AP000974.1-201ENST00000623909 2387 ntBASIC16.97■□□□□ 0.31
SDCBPO00560 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.97■□□□□ 0.31
SDCBPO00560 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.97■□□□□ 0.31
SDCBPO00560 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SDCBPO00560 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.97■□□□□ 0.31
SDCBPO00560 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.97■□□□□ 0.31
SDCBPO00560 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC16.97■□□□□ 0.31
SDCBPO00560 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC16.97■□□□□ 0.31
SDCBPO00560 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.97■□□□□ 0.31
SDCBPO00560 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC16.97■□□□□ 0.31
SDCBPO00560 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC16.97■□□□□ 0.31
SDCBPO00560 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.97■□□□□ 0.31
SDCBPO00560 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
SDCBPO00560 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC16.97■□□□□ 0.31
SDCBPO00560 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC16.97■□□□□ 0.31
SDCBPO00560 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SDCBPO00560 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SDCBPO00560 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.96■□□□□ 0.31
SDCBPO00560 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.96■□□□□ 0.31
SDCBPO00560 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
SDCBPO00560 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 UBE2DNL-204ENST00000602536 740 ntBASIC16.96■□□□□ 0.31
SDCBPO00560 MIR6821-201ENST00000617625 74 ntBASIC16.96■□□□□ 0.31
SDCBPO00560 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.96■□□□□ 0.31
SDCBPO00560 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SDCBPO00560 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC16.96■□□□□ 0.31
SDCBPO00560 AC116050.2-201ENST00000612102 1779 ntBASIC16.96■□□□□ 0.31
SDCBPO00560 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.96■□□□□ 0.31
SDCBPO00560 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
SDCBPO00560 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDCBPO00560 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.96■□□□□ 0.3
SDCBPO00560 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
SDCBPO00560 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
SDCBPO00560 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SDCBPO00560 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
SDCBPO00560 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
SDCBPO00560 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 BX323043.1-201ENST00000641006 1765 ntBASIC16.95■□□□□ 0.3
SDCBPO00560 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SDCBPO00560 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms