Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 AL138724.1-201ENST00000606771 1088 ntBASIC14.63□□□□□ -0.07
SMKR1H3BMG3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 AR-207ENST00000612010 3896 ntTSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
SMKR1H3BMG3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 PTGES2-AS1-201ENST00000443493 2100 ntBASIC14.62□□□□□ -0.07
SMKR1H3BMG3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 MIR3621-201ENST00000580529 85 ntBASIC14.62□□□□□ -0.07
SMKR1H3BMG3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC14.62□□□□□ -0.07
SMKR1H3BMG3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 RARRES2P1-201ENST00000474487 481 ntBASIC14.61□□□□□ -0.07
SMKR1H3BMG3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC14.61□□□□□ -0.07
SMKR1H3BMG3 MIR2861-201ENST00000636310 90 ntBASIC14.61□□□□□ -0.07
SMKR1H3BMG3 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 DPP3P2-201ENST00000416030 1696 ntBASIC14.61□□□□□ -0.07
SMKR1H3BMG3 AC005224.4-201ENST00000583262 1652 ntBASIC14.61□□□□□ -0.07
SMKR1H3BMG3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14.61□□□□□ -0.07
SMKR1H3BMG3 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 AL512631.2-201ENST00000604634 923 ntBASIC14.6□□□□□ -0.07
SMKR1H3BMG3 AC011298.3-201ENST00000615796 283 ntBASIC14.6□□□□□ -0.07
SMKR1H3BMG3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SMKR1H3BMG3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms