Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 HLA-G-202ENST00000376815 851 ntBASIC34.97■■■■□ 3.19
CCDC88BA6NC98 HLA-G-203ENST00000376818 1127 ntBASIC34.97■■■■□ 3.19
CCDC88BA6NC98 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 AC121338.2-201ENST00000622535 1744 ntBASIC34.97■■■■□ 3.19
CCDC88BA6NC98 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 RNF146-204ENST00000476956 884 ntTSL 2 BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 TPM1-226ENST00000560959 925 ntTSL 2 BASIC34.97■■■■□ 3.19
CCDC88BA6NC98 AC026271.3-201ENST00000571884 352 ntBASIC34.97■■■■□ 3.19
CCDC88BA6NC98 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC34.96■■■■□ 3.19
CCDC88BA6NC98 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC34.96■■■■□ 3.19
CCDC88BA6NC98 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC34.96■■■■□ 3.19
CCDC88BA6NC98 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC34.96■■■■□ 3.19
CCDC88BA6NC98 CALM3-202ENST00000391918 702 ntTSL 2 BASIC34.96■■■■□ 3.19
CCDC88BA6NC98 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC34.96■■■■□ 3.19
CCDC88BA6NC98 AC010203.1-204ENST00000548782 407 ntBASIC34.96■■■■□ 3.19
CCDC88BA6NC98 KRT18P22-201ENST00000402024 1347 ntBASIC34.95■■■■□ 3.19
CCDC88BA6NC98 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 TMA16-209ENST00000513272 803 ntTSL 2 BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
CCDC88BA6NC98 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC34.95■■■■□ 3.18
CCDC88BA6NC98 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 PPP1R14BP5-201ENST00000440334 435 ntBASIC34.94■■■■□ 3.18
CCDC88BA6NC98 DUX4L26-201ENST00000489078 1255 ntBASIC34.94■■■■□ 3.18
CCDC88BA6NC98 AC006011.2-201ENST00000621313 1158 ntBASIC34.94■■■■□ 3.18
CCDC88BA6NC98 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CCDC88BA6NC98 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 AL445675.2-201ENST00000620291 557 ntBASIC34.93■■■■□ 3.18
CCDC88BA6NC98 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
CCDC88BA6NC98 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 AC104076.2-201ENST00000448912 469 ntBASIC34.92■■■■□ 3.18
CCDC88BA6NC98 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
CCDC88BA6NC98 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC34.91■■■■□ 3.18
CCDC88BA6NC98 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC34.91■■■■□ 3.18
CCDC88BA6NC98 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CCDC88BA6NC98 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CCDC88BA6NC98 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
CCDC88BA6NC98 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CCDC88BA6NC98 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC34.91■■■■□ 3.18
CCDC88BA6NC98 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 B3GAT3P1-201ENST00000471720 806 ntBASIC34.9■■■■□ 3.18
CCDC88BA6NC98 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC34.9■■■■□ 3.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms