Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV1-1A0A0B4J248 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 PCDHB18P-201ENST00000524813 2368 ntBASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 LTB4R2-202ENST00000528054 3092 ntBASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 GUK1-208ENST00000366728 842 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 AC092171.4-201ENST00000609130 632 ntBASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TRAV1-1A0A0B4J248 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
TRAV1-1A0A0B4J248 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.64■□□□□ 0.1
TRAV1-1A0A0B4J248 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 AP000997.3-201ENST00000623333 2250 ntBASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 ABHD17AP5-201ENST00000580133 923 ntBASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV1-1A0A0B4J248 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 AC061975.6-201ENST00000579045 1553 ntBASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 NOC2LP2-201ENST00000407594 1944 ntBASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV1-1A0A0B4J248 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 AC104581.1-202ENST00000635932 2618 ntBASIC15.62■□□□□ 0.09
TRAV1-1A0A0B4J248 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms