Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
MSX1P28360 RNU6-252P-201ENST00000363232 107 ntBASIC8.17□□□□□ -1.1
MSX1P28360 Y_RNA.359-201ENST00000365498 102 ntBASIC8.17□□□□□ -1.1
MSX1P28360 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 MTCO1P56-201ENST00000401674 224 ntBASIC8.17□□□□□ -1.1
MSX1P28360 MIR548F1-201ENST00000408667 84 ntBASIC8.17□□□□□ -1.1
MSX1P28360 SNX10-203ENST00000409367 746 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 AC092638.1-201ENST00000411966 1275 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC007899.1-201ENST00000412776 775 ntBASIC8.17□□□□□ -1.1
MSX1P28360 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 HLA-DQB1-AS1-201ENST00000419852 552 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC006960.1-201ENST00000419980 153 ntBASIC8.17□□□□□ -1.1
MSX1P28360 OR51A8P-201ENST00000421277 940 ntBASIC8.17□□□□□ -1.1
MSX1P28360 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC8.17□□□□□ -1.1
MSX1P28360 AC114492.1-201ENST00000434936 454 ntBASIC8.17□□□□□ -1.1
MSX1P28360 MTCYBP34-201ENST00000439552 670 ntBASIC8.17□□□□□ -1.1
MSX1P28360 ASS1P11-201ENST00000441309 1216 ntBASIC8.17□□□□□ -1.1
MSX1P28360 IGKV1D-35-201ENST00000442736 271 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC073254.1-202ENST00000447488 640 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 PRKAG2-AS1-201ENST00000464464 382 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 RN7SL35P-201ENST00000466169 292 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC055758.2-202ENST00000482351 624 ntTSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 AC041039.1-201ENST00000485656 536 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 RN7SL62P-201ENST00000498506 297 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC005178.1-201ENST00000508392 440 ntBASIC8.17□□□□□ -1.1
MSX1P28360 LINC02116-201ENST00000509455 493 ntTSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 AC027698.1-201ENST00000518536 625 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 AP001804.1-201ENST00000526868 919 ntBASIC8.17□□□□□ -1.1
MSX1P28360 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 FDPSP4-201ENST00000534629 1049 ntBASIC8.17□□□□□ -1.1
MSX1P28360 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 AC027544.1-201ENST00000538408 433 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC063947.2-201ENST00000547000 1256 ntBASIC8.17□□□□□ -1.1
MSX1P28360 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 PLA2G1B-203ENST00000549767 562 ntTSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 DUXAP1-201ENST00000556632 463 ntBASIC8.17□□□□□ -1.1
MSX1P28360 HP-207ENST00000562526 685 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 AC020779.2-201ENST00000568984 393 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 AC090912.1-201ENST00000578831 570 ntTSL 4 BASIC8.17□□□□□ -1.1
MSX1P28360 AC018697.1-202ENST00000582650 592 ntTSL 4 BASIC8.17□□□□□ -1.1
MSX1P28360 FAM95B1-209ENST00000590863 789 ntTSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 VN1R81P-201ENST00000602085 372 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC005377.1-201ENST00000605126 456 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC090186.1-201ENST00000605991 572 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC073657.1-201ENST00000607504 316 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 AC006566.1-201ENST00000608943 513 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AP002345.2-201ENST00000609961 904 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC009237.15-201ENST00000610252 501 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AL669942.1-201ENST00000611307 713 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 PCDH18-206ENST00000611581 819 ntTSL 4 BASIC8.17□□□□□ -1.1
MSX1P28360 RMST_10.1-201ENST00000616309 154 ntBASIC8.17□□□□□ -1.1
MSX1P28360 AC090099.1-204ENST00000623626 849 ntBASIC8.17□□□□□ -1.1
MSX1P28360 LINC01320-214ENST00000627935 916 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 MTND1P37-201ENST00000636562 264 ntBASIC8.17□□□□□ -1.1
MSX1P28360 OR51A8P-202ENST00000641606 1038 ntBASIC8.17□□□□□ -1.1
MSX1P28360 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 CALD1-202ENST00000361901 4114 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 SPATA22-209ENST00000572969 1399 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 AC073429.2-201ENST00000569694 1444 ntBASIC8.17□□□□□ -1.1
MSX1P28360 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 CCR4-201ENST00000330953 3095 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 AC024610.2-205ENST00000584758 1567 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 NT5C2-201ENST00000343289 3435 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 PUS3-201ENST00000227474 1843 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 ABRAXAS1-206ENST00000506553 1869 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 TP63-202ENST00000320472 2032 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 TP63-210ENST00000440651 2031 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 FAM193A-204ENST00000505311 4110 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 HMSD-201ENST00000408945 2101 ntAPPRIS P1 TSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 MCM3AP-AS1-201ENST00000414659 2539 ntTSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 CXCR2P1-201ENST00000439871 2503 ntTSL 3 BASIC8.17□□□□□ -1.1
MSX1P28360 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 TTC3P1-201ENST00000399586 6081 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AL353588.1-201ENST00000505802 3513 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 DSG4-201ENST00000308128 3579 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 ARHGEF9-234ENST00000637557 4775 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
MSX1P28360 OR52K1-201ENST00000307632 1030 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
MSX1P28360 FAM3C2-201ENST00000312214 681 ntBASIC8.16□□□□□ -1.1
MSX1P28360 PPP4R1L-202ENST00000334187 2746 ntBASIC8.16□□□□□ -1.1
MSX1P28360 SNORD56.4-201ENST00000363883 71 ntBASIC8.16□□□□□ -1.1
MSX1P28360 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 B4GALT6-203ENST00000383131 1239 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 CASP5-202ENST00000393141 1488 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 KRTAP9-9-201ENST00000394008 981 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
MSX1P28360 GLT8D1-202ENST00000394783 1621 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 KIAA1217-208ENST00000396446 3059 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 BRCC3-206ENST00000399042 954 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 AC074254.1-201ENST00000399152 404 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 GEMIN6-203ENST00000409566 834 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 RN7SKP142-201ENST00000411236 328 ntBASIC8.16□□□□□ -1.1
MSX1P28360 SNRPGP11-201ENST00000411777 232 ntBASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms