Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDH9Q9ULB4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDH9Q9ULB4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 AL158047.1-201ENST00000445918 881 ntBASIC21.24■□□□□ 0.99
CDH9Q9ULB4 RPPH1-201ENST00000516869 333 ntBASIC21.24■□□□□ 0.99
CDH9Q9ULB4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 AL359736.2-201ENST00000621992 437 ntBASIC21.24■□□□□ 0.99
CDH9Q9ULB4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CDH9Q9ULB4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.23■□□□□ 0.99
CDH9Q9ULB4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH9Q9ULB4 AC020907.5-201ENST00000624372 1936 ntBASIC21.22■□□□□ 0.99
CDH9Q9ULB4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDH9Q9ULB4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CDH9Q9ULB4 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDH9Q9ULB4 AL121829.2-201ENST00000620908 328 ntBASIC21.22■□□□□ 0.99
CDH9Q9ULB4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.22■□□□□ 0.99
CDH9Q9ULB4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH9Q9ULB4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 AC124283.5-201ENST00000624661 1809 ntBASIC21.21■□□□□ 0.99
CDH9Q9ULB4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 AC066615.1-201ENST00000640911 628 ntBASIC21.21■□□□□ 0.99
CDH9Q9ULB4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH9Q9ULB4 SMG8-203ENST00000578922 2178 ntBASIC21.2■□□□□ 0.98
CDH9Q9ULB4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 KRT16P6-202ENST00000425692 1426 ntBASIC21.2■□□□□ 0.98
CDH9Q9ULB4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH9Q9ULB4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.19■□□□□ 0.98
CDH9Q9ULB4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms