Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCIF1Q9H4Z3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 AC099778.1-201ENST00000568593 1911 ntBASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCIF1Q9H4Z3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.96■■□□□ 1.11
PCIF1Q9H4Z3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCIF1Q9H4Z3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
PCIF1Q9H4Z3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCIF1Q9H4Z3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.92■■□□□ 1.1
PCIF1Q9H4Z3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCIF1Q9H4Z3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.92■■□□□ 1.1
PCIF1Q9H4Z3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCIF1Q9H4Z3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.92■■□□□ 1.1
PCIF1Q9H4Z3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms