Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
SHANK3Q9BYB0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SHANK3Q9BYB0 AC006011.2-201ENST00000621313 1158 ntBASIC26.2■■□□□ 1.79
SHANK3Q9BYB0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
SHANK3Q9BYB0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.2■■□□□ 1.78
SHANK3Q9BYB0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SHANK3Q9BYB0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SHANK3Q9BYB0 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 CFL2-205ENST00000555765 632 ntTSL 2 BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 DUX4L26-201ENST00000489078 1255 ntBASIC26.19■■□□□ 1.78
SHANK3Q9BYB0 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 AL024507.2-201ENST00000606070 2574 ntBASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 NAPSB-206ENST00000562112 1266 ntBASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
SHANK3Q9BYB0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHANK3Q9BYB0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 YBX1P10-201ENST00000444752 975 ntBASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 AC010203.1-204ENST00000548782 407 ntBASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 DGCR10-201ENST00000609839 495 ntBASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 CR392000.1-201ENST00000624770 1228 ntBASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHANK3Q9BYB0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 AC005363.2-201ENST00000618631 242 ntBASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHANK3Q9BYB0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SHANK3Q9BYB0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 C2orf69P3-201ENST00000565542 1120 ntBASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 WWOX-216ENST00000569818 525 ntBASIC26.14■■□□□ 1.77
SHANK3Q9BYB0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SHANK3Q9BYB0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC26.13■■□□□ 1.77
SHANK3Q9BYB0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC26.13■■□□□ 1.77
SHANK3Q9BYB0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHANK3Q9BYB0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms