Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM56Q9BRZ2 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 TERF1P5-201ENST00000477545 1207 ntBASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 AL691432.2-201ENST00000607222 2038 ntBASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM56Q9BRZ2 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 AL158211.5-201ENST00000623583 2518 ntBASIC20.41■□□□□ 0.86
TRIM56Q9BRZ2 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 MFSD11-216ENST00000590393 1141 ntBASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 AC011767.1-201ENST00000617410 1153 ntBASIC20.4■□□□□ 0.86
TRIM56Q9BRZ2 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.39■□□□□ 0.86
TRIM56Q9BRZ2 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM56Q9BRZ2 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM56Q9BRZ2 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.39■□□□□ 0.86
TRIM56Q9BRZ2 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM56Q9BRZ2 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM56Q9BRZ2 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 CDV3P1-201ENST00000471403 739 ntBASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms