Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 PKD1P6-201ENST00000343738 4769 ntBASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 AC005829.2-201ENST00000571422 1056 ntBASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 AC112907.3-201ENST00000577781 2400 ntBASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.65■□□□□ 0.58
CTHRC1Q96CG8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTHRC1Q96CG8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
CTHRC1Q96CG8 AL691432.2-201ENST00000607222 2038 ntBASIC18.64■□□□□ 0.58
CTHRC1Q96CG8 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 KRT16P6-202ENST00000425692 1426 ntBASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTHRC1Q96CG8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 AC060766.5-201ENST00000590539 871 ntBASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTHRC1Q96CG8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.62■□□□□ 0.57
CTHRC1Q96CG8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms