Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 PENK-204ENST00000518770 863 ntTSL 2 BASIC24.6■■□□□ 1.53
USP48Q86UV5 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC24.6■■□□□ 1.53
USP48Q86UV5 C2orf69P4-201ENST00000565394 541 ntBASIC24.6■■□□□ 1.53
USP48Q86UV5 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC24.6■■□□□ 1.53
USP48Q86UV5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC24.6■■□□□ 1.53
USP48Q86UV5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC24.6■■□□□ 1.53
USP48Q86UV5 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC24.6■■□□□ 1.53
USP48Q86UV5 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC24.59■■□□□ 1.53
USP48Q86UV5 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.59■■□□□ 1.53
USP48Q86UV5 RN7SL850P-201ENST00000579959 291 ntBASIC24.59■■□□□ 1.53
USP48Q86UV5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC24.59■■□□□ 1.53
USP48Q86UV5 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC24.59■■□□□ 1.53
USP48Q86UV5 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
USP48Q86UV5 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP48Q86UV5 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
USP48Q86UV5 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
USP48Q86UV5 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.58■■□□□ 1.53
USP48Q86UV5 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC24.58■■□□□ 1.53
USP48Q86UV5 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC24.58■■□□□ 1.53
USP48Q86UV5 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC24.58■■□□□ 1.53
USP48Q86UV5 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 NT5C-211ENST00000582170 653 ntTSL 3 BASIC24.58■■□□□ 1.53
USP48Q86UV5 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC24.58■■□□□ 1.53
USP48Q86UV5 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
USP48Q86UV5 CD177P1-201ENST00000606252 935 ntBASIC24.58■■□□□ 1.53
USP48Q86UV5 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.58■■□□□ 1.53
USP48Q86UV5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
USP48Q86UV5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP48Q86UV5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
USP48Q86UV5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC24.58■■□□□ 1.52
USP48Q86UV5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC24.58■■□□□ 1.52
USP48Q86UV5 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.52
USP48Q86UV5 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
USP48Q86UV5 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC24.57■■□□□ 1.52
USP48Q86UV5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC24.57■■□□□ 1.52
USP48Q86UV5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.57■■□□□ 1.52
USP48Q86UV5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
USP48Q86UV5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
USP48Q86UV5 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC24.57■■□□□ 1.52
USP48Q86UV5 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC24.57■■□□□ 1.52
USP48Q86UV5 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC24.57■■□□□ 1.52
USP48Q86UV5 AL353708.3-201ENST00000610272 989 ntBASIC24.57■■□□□ 1.52
USP48Q86UV5 AC006557.6-201ENST00000623071 864 ntBASIC24.57■■□□□ 1.52
USP48Q86UV5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC24.57■■□□□ 1.52
USP48Q86UV5 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP48Q86UV5 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
USP48Q86UV5 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC24.56■■□□□ 1.52
USP48Q86UV5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 GGT1-206ENST00000404223 952 ntTSL 2 BASIC24.56■■□□□ 1.52
USP48Q86UV5 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC24.56■■□□□ 1.52
USP48Q86UV5 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC24.56■■□□□ 1.52
USP48Q86UV5 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
USP48Q86UV5 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
USP48Q86UV5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP48Q86UV5 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP48Q86UV5 LINC01006-201ENST00000333319 2292 ntBASIC24.55■■□□□ 1.52
USP48Q86UV5 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP48Q86UV5 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP48Q86UV5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP48Q86UV5 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP48Q86UV5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms