Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 MIR762-201ENST00000390236 83 ntBASIC12.59□□□□□ -0.39
LINC00643Q86TS7 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.39
LINC00643Q86TS7 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC12.58□□□□□ -0.39
LINC00643Q86TS7 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
LINC00643Q86TS7 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 ZNRF2P1-201ENST00000441407 443 ntBASIC12.58□□□□□ -0.4
LINC00643Q86TS7 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 SIRPAP1-201ENST00000448467 1770 ntBASIC12.58□□□□□ -0.4
LINC00643Q86TS7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 AL391005.1-201ENST00000623953 2435 ntBASIC12.58□□□□□ -0.4
LINC00643Q86TS7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
LINC00643Q86TS7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 MST1L-201ENST00000442552 2185 ntBASIC12.57□□□□□ -0.4
LINC00643Q86TS7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00643Q86TS7 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms