Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 KRT8P36-201ENST00000489121 1440 ntBASIC14.06□□□□□ -0.16
CSMD3Q7Z407 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC14.06□□□□□ -0.16
CSMD3Q7Z407 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 BX664615.1-201ENST00000443558 458 ntBASIC14.05□□□□□ -0.16
CSMD3Q7Z407 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 AK4P3-201ENST00000418260 669 ntBASIC14.05□□□□□ -0.16
CSMD3Q7Z407 B3GAT3P1-201ENST00000471720 806 ntBASIC14.05□□□□□ -0.16
CSMD3Q7Z407 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.05□□□□□ -0.16
CSMD3Q7Z407 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CSMD3Q7Z407 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 AC063952.2-201ENST00000498792 1227 ntBASIC14.04□□□□□ -0.16
CSMD3Q7Z407 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 AL031985.4-201ENST00000642138 673 ntBASIC14.04□□□□□ -0.16
CSMD3Q7Z407 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CSMD3Q7Z407 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 AC023632.3-201ENST00000521633 145 ntBASIC14.03□□□□□ -0.16
CSMD3Q7Z407 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CSMD3Q7Z407 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms