Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.47■□□□□ 0.71
USP53Q70EK8 LINC01023-201ENST00000606054 436 ntBASIC19.47■□□□□ 0.71
USP53Q70EK8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
USP53Q70EK8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP53Q70EK8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP53Q70EK8 KRT8P36-201ENST00000489121 1440 ntBASIC19.47■□□□□ 0.71
USP53Q70EK8 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP53Q70EK8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USP53Q70EK8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP53Q70EK8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP53Q70EK8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
USP53Q70EK8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.46■□□□□ 0.71
USP53Q70EK8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.46■□□□□ 0.71
USP53Q70EK8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.46■□□□□ 0.71
USP53Q70EK8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP53Q70EK8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.45■□□□□ 0.7
USP53Q70EK8 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.45■□□□□ 0.7
USP53Q70EK8 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.45■□□□□ 0.7
USP53Q70EK8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
USP53Q70EK8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.45■□□□□ 0.7
USP53Q70EK8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 AC010331.1-201ENST00000611423 582 ntBASIC19.45■□□□□ 0.7
USP53Q70EK8 AC110285.5-201ENST00000611501 352 ntBASIC19.45■□□□□ 0.7
USP53Q70EK8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP53Q70EK8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.45■□□□□ 0.7
USP53Q70EK8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
USP53Q70EK8 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.45■□□□□ 0.7
USP53Q70EK8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP53Q70EK8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP53Q70EK8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
USP53Q70EK8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 PLK5-205ENST00000642079 1969 ntBASIC19.44■□□□□ 0.7
USP53Q70EK8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
USP53Q70EK8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 AC133681.1-201ENST00000465482 601 ntBASIC19.44■□□□□ 0.7
USP53Q70EK8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.44■□□□□ 0.7
USP53Q70EK8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.44■□□□□ 0.7
USP53Q70EK8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.44■□□□□ 0.7
USP53Q70EK8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
USP53Q70EK8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP53Q70EK8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.44■□□□□ 0.7
USP53Q70EK8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.44■□□□□ 0.7
USP53Q70EK8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.43■□□□□ 0.7
USP53Q70EK8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 RPS2P55-201ENST00000397318 883 ntBASIC19.43■□□□□ 0.7
USP53Q70EK8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.43■□□□□ 0.7
USP53Q70EK8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 AC107956.1-201ENST00000494359 873 ntBASIC19.43■□□□□ 0.7
USP53Q70EK8 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.43■□□□□ 0.7
USP53Q70EK8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.43■□□□□ 0.7
USP53Q70EK8 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.43■□□□□ 0.7
USP53Q70EK8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.43■□□□□ 0.7
USP53Q70EK8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
USP53Q70EK8 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
USP53Q70EK8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.43■□□□□ 0.7
USP53Q70EK8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms