Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 AL137013.1-201ENST00000432946 1228 ntBASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 AP002982.1-201ENST00000492365 877 ntBASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 AL390719.1-204ENST00000412397 1219 ntBASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSPG4Q6UVK1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AC104076.2-201ENST00000448912 469 ntBASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AC004264.1-201ENST00000608354 794 ntBASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AL358472.4-201ENST00000633140 710 ntBASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AK4P3-201ENST00000418260 669 ntBASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSPG4Q6UVK1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
CSPG4Q6UVK1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CSPG4Q6UVK1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 AC027702.1-201ENST00000563810 1770 ntBASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.57■□□□□ 0.24
CSPG4Q6UVK1 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms