Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
USF3Q68DE3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.25■□□□□ 0.35
USF3Q68DE3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.25■□□□□ 0.35
USF3Q68DE3 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
USF3Q68DE3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
USF3Q68DE3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.25■□□□□ 0.35
USF3Q68DE3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.25■□□□□ 0.35
USF3Q68DE3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 RPS2P55-201ENST00000397318 883 ntBASIC17.25■□□□□ 0.35
USF3Q68DE3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USF3Q68DE3 TSPY7P-201ENST00000431358 1114 ntBASIC17.25■□□□□ 0.35
USF3Q68DE3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 AC107956.1-201ENST00000494359 873 ntBASIC17.25■□□□□ 0.35
USF3Q68DE3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.25■□□□□ 0.35
USF3Q68DE3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.25■□□□□ 0.35
USF3Q68DE3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.25■□□□□ 0.35
USF3Q68DE3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.25■□□□□ 0.35
USF3Q68DE3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.25■□□□□ 0.35
USF3Q68DE3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.24■□□□□ 0.35
USF3Q68DE3 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.24■□□□□ 0.35
USF3Q68DE3 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.24■□□□□ 0.35
USF3Q68DE3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.24■□□□□ 0.35
USF3Q68DE3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.24■□□□□ 0.35
USF3Q68DE3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.24■□□□□ 0.35
USF3Q68DE3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USF3Q68DE3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.24■□□□□ 0.35
USF3Q68DE3 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.24■□□□□ 0.35
USF3Q68DE3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.24■□□□□ 0.35
USF3Q68DE3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF3Q68DE3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USF3Q68DE3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.24■□□□□ 0.35
USF3Q68DE3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
USF3Q68DE3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.23■□□□□ 0.35
USF3Q68DE3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 FAM210CP-201ENST00000445714 574 ntBASIC17.23■□□□□ 0.35
USF3Q68DE3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
USF3Q68DE3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.23■□□□□ 0.35
USF3Q68DE3 AC005829.2-201ENST00000571422 1056 ntBASIC17.23■□□□□ 0.35
USF3Q68DE3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USF3Q68DE3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
USF3Q68DE3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
USF3Q68DE3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF3Q68DE3 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.23■□□□□ 0.35
USF3Q68DE3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
USF3Q68DE3 RARRES2P10-201ENST00000564312 460 ntBASIC17.23■□□□□ 0.35
USF3Q68DE3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
USF3Q68DE3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
USF3Q68DE3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.22■□□□□ 0.35
USF3Q68DE3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.22■□□□□ 0.35
USF3Q68DE3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 KRT17P2-201ENST00000300992 1314 ntBASIC17.22■□□□□ 0.35
USF3Q68DE3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.22■□□□□ 0.35
USF3Q68DE3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.22■□□□□ 0.35
USF3Q68DE3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.22■□□□□ 0.35
USF3Q68DE3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.22■□□□□ 0.35
USF3Q68DE3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USF3Q68DE3 PKD1P6-201ENST00000343738 4769 ntBASIC17.22■□□□□ 0.35
USF3Q68DE3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USF3Q68DE3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms