Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.08■□□□□ 0.49
LSM3P62310 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LSM3P62310 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
LSM3P62310 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LSM3P62310 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
LSM3P62310 TMEM179-206ENST00000616017 1645 ntBASIC18.08■□□□□ 0.48
LSM3P62310 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM3P62310 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
LSM3P62310 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.07■□□□□ 0.48
LSM3P62310 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
LSM3P62310 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.07■□□□□ 0.48
LSM3P62310 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LSM3P62310 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM3P62310 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM3P62310 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LSM3P62310 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM3P62310 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
LSM3P62310 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.06■□□□□ 0.48
LSM3P62310 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.06■□□□□ 0.48
LSM3P62310 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 TSPY13P-201ENST00000338964 914 ntBASIC18.06■□□□□ 0.48
LSM3P62310 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.06■□□□□ 0.48
LSM3P62310 AC099791.2-201ENST00000605725 427 ntBASIC18.06■□□□□ 0.48
LSM3P62310 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.06■□□□□ 0.48
LSM3P62310 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.06■□□□□ 0.48
LSM3P62310 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.06■□□□□ 0.48
LSM3P62310 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM3P62310 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LSM3P62310 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LSM3P62310 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.05■□□□□ 0.48
LSM3P62310 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
LSM3P62310 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.05■□□□□ 0.48
LSM3P62310 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.05■□□□□ 0.48
LSM3P62310 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.05■□□□□ 0.48
LSM3P62310 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.05■□□□□ 0.48
LSM3P62310 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.05■□□□□ 0.48
LSM3P62310 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.05■□□□□ 0.48
LSM3P62310 MIR3181-201ENST00000578512 73 ntBASIC18.05■□□□□ 0.48
LSM3P62310 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.05■□□□□ 0.48
LSM3P62310 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM3P62310 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.04■□□□□ 0.48
LSM3P62310 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LSM3P62310 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
LSM3P62310 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.04■□□□□ 0.48
LSM3P62310 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LSM3P62310 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LSM3P62310 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM3P62310 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms