Protein–RNA interactions for Protein: P53549

RPT4, 26S proteasome subunit RPT4, yeastyeast

Known RBP Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPT4P53549 BIL1YOR304C-A 231 nt1.22□□□□□ -2.21
RPT4P53549 YBR221W-AYBR221W-A 105 nt1.22□□□□□ -2.21
RPT4P53549 MMS4YBR098W 2076 nt1.22□□□□□ -2.21
RPT4P53549 APL3YBL037W 3078 nt1.21□□□□□ -2.21
RPT4P53549 RAD9YDR217C 3930 nt1.21□□□□□ -2.22
RPT4P53549 SEC3YER008C 4011 nt1.21□□□□□ -2.22
RPT4P53549 SET3YKR029C 2256 nt1.2□□□□□ -2.22
RPT4P53549 PAM16YJL104W 450 nt1.2□□□□□ -2.22
RPT4P53549 YBR012CYBR012C 420 nt1.2□□□□□ -2.22
RPT4P53549 ALY2YJL084C 3141 nt1.2□□□□□ -2.22
RPT4P53549 NUP145YGL092W 3954 nt1.19□□□□□ -2.22
RPT4P53549 SLD3YGL113W 2007 nt1.19□□□□□ -2.22
RPT4P53549 MAM33YIL070C 801 nt1.19□□□□□ -2.22
RPT4P53549 PKH2YOL100W 3246 nt1.19□□□□□ -2.22
RPT4P53549 YNL284C-BYNL284C-B 5268 nt1.19□□□□□ -2.22
RPT4P53549 EAF1YDR359C 2949 nt1.18□□□□□ -2.22
RPT4P53549 SPT7YBR081C 3999 nt1.18□□□□□ -2.22
RPT4P53549 YIR044CYIR044C 186 nt1.18□□□□□ -2.22
RPT4P53549 STO1YMR125W 2586 nt1.18□□□□□ -2.22
RPT4P53549 STB6YKL072W 2301 nt1.17□□□□□ -2.22
RPT4P53549 YDL206WYDL206W 2289 nt1.17□□□□□ -2.22
RPT4P53549 GPG1YGL121C 381 nt1.17□□□□□ -2.22
RPT4P53549 CUL3YGR003W 2235 nt1.17□□□□□ -2.22
RPT4P53549 NIP100YPL174C 2607 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)BtF(GAA)B 73 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)FtF(GAA)F 73 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)GtF(GAA)G 73 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)H1tF(GAA)H1 73 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)H2tF(GAA)H2 73 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)MtF(GAA)M 73 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)P1tF(GAA)P1 73 nt1.16□□□□□ -2.22
RPT4P53549 tF(GAA)P2tF(GAA)P2 73 nt1.16□□□□□ -2.22
RPT4P53549 YBL008W-AYBL008W-A 240 nt1.16□□□□□ -2.22
RPT4P53549 PDE2YOR360C 1581 nt1.16□□□□□ -2.22
RPT4P53549 NST1YNL091W 3723 nt1.16□□□□□ -2.22
RPT4P53549 CDC39YCR093W 6327 nt1.16□□□□□ -2.22
RPT4P53549 RPL35AYDL191W 363 nt1.15□□□□□ -2.23
RPT4P53549 YBR200W-AYBR200W-A 165 nt1.15□□□□□ -2.23
RPT4P53549 IFH1YLR223C 3258 nt1.15□□□□□ -2.23
RPT4P53549 BEM2YER155C 6504 nt1.15□□□□□ -2.23
RPT4P53549 YAR029WYAR029W 225 nt1.14□□□□□ -2.23
RPT4P53549 BUD3YCL014W 4911 nt1.14□□□□□ -2.23
RPT4P53549 HTB2YBL002W 396 nt1.13□□□□□ -2.23
RPT4P53549 YPR016W-AYPR016W-A 261 nt1.13□□□□□ -2.23
RPT4P53549 YLL007CYLL007C 1998 nt1.12□□□□□ -2.23
RPT4P53549 HMRA1YCR097W 381 nt1.12□□□□□ -2.23
RPT4P53549 RPL34BYIL052C 366 nt1.12□□□□□ -2.23
RPT4P53549 YJR011CYJR011C 786 nt1.12□□□□□ -2.23
RPT4P53549 YHL046W-AYHL046W-A 327 nt1.11□□□□□ -2.23
RPT4P53549 YIL142C-AYIL142C-A 333 nt1.11□□□□□ -2.23
RPT4P53549 YPR197CYPR197C 564 nt1.11□□□□□ -2.23
RPT4P53549 YCK3YER123W 1575 nt1.11□□□□□ -2.23
RPT4P53549 WAR1YML076C 2835 nt1.1□□□□□ -2.23
RPT4P53549 PTP2YOR208W 2253 nt1.1□□□□□ -2.23
RPT4P53549 PAN2YGL094C 3348 nt1.08□□□□□ -2.24
RPT4P53549 APL1YJR005W 2103 nt1.08□□□□□ -2.24
RPT4P53549 NUP157YER105C 4176 nt1.07□□□□□ -2.24
RPT4P53549 snR56snR56 88 nt1.07□□□□□ -2.24
RPT4P53549 YDR048CYDR048C 315 nt1.07□□□□□ -2.24
RPT4P53549 YHR007C-AYHR007C-A 216 nt1.07□□□□□ -2.24
RPT4P53549 YAF9YNL107W 681 nt1.07□□□□□ -2.24
RPT4P53549 GEA2YEL022W 4380 nt1.06□□□□□ -2.24
RPT4P53549 YDR521WYDR521W 336 nt1.06□□□□□ -2.24
RPT4P53549 GIM4YEL003W 336 nt1.06□□□□□ -2.24
RPT4P53549 YHR175W-AYHR175W-A 150 nt1.06□□□□□ -2.24
RPT4P53549 TAR1YLR154W-C 375 nt1.06□□□□□ -2.24
RPT4P53549 YPL038W-AYPL038W-A 192 nt1.06□□□□□ -2.24
RPT4P53549 SMC1YFL008W 3678 nt1.04□□□□□ -2.24
RPT4P53549 YBR206WYBR206W 324 nt1.04□□□□□ -2.24
RPT4P53549 HMRA2YCR096C 360 nt1.03□□□□□ -2.24
RPT4P53549 YJR029WYJR029W 5268 nt1.02□□□□□ -2.25
RPT4P53549 YPR137C-BYPR137C-B 5268 nt1.02□□□□□ -2.25
RPT4P53549 VAM6YDL077C 3150 nt1.02□□□□□ -2.25
RPT4P53549 YHL042WYHL042W 453 nt1.01□□□□□ -2.25
RPT4P53549 YBR064WYBR064W 429 nt1.01□□□□□ -2.25
RPT4P53549 YPR117WYPR117W 7470 nt1□□□□□ -2.25
RPT4P53549 UBP3YER151C 2739 nt1□□□□□ -2.25
RPT4P53549 SCC2YDR180W 4482 nt1□□□□□ -2.25
RPT4P53549 YDR102CYDR102C 333 nt1□□□□□ -2.25
RPT4P53549 YDL240C-AYDL240C-A 138 nt0.99□□□□□ -2.25
RPT4P53549 ECM12YHR021W-A 456 nt0.99□□□□□ -2.25
RPT4P53549 KAP120YPL125W 3099 nt0.99□□□□□ -2.25
RPT4P53549 UTP20YBL004W 7482 nt0.98□□□□□ -2.25
RPT4P53549 SSS1YDR086C 243 nt0.98□□□□□ -2.25
RPT4P53549 tR(ACG)Q2tR(ACG)Q2 74 nt0.98□□□□□ -2.25
RPT4P53549 RPS25BYLR333C 327 nt0.98□□□□□ -2.25
RPT4P53549 YDL196WYDL196W 330 nt0.97□□□□□ -2.25
RPT4P53549 OLI1Q0130 231 nt0.97□□□□□ -2.25
RPT4P53549 YOL014WYOL014W 375 nt0.97□□□□□ -2.25
RPT4P53549 DOP1YDR141C 5097 nt0.96□□□□□ -2.25
RPT4P53549 EMT1tM(CAU)D 73 nt0.96□□□□□ -2.26
RPT4P53549 EMT5tM(CAU)J1 73 nt0.96□□□□□ -2.26
RPT4P53549 EMT3tM(CAU)J2 73 nt0.96□□□□□ -2.26
RPT4P53549 EMT4tM(CAU)M 73 nt0.96□□□□□ -2.26
RPT4P53549 EMT2tM(CAU)O2 73 nt0.96□□□□□ -2.26
RPT4P53549 YJL120WYJL120W 324 nt0.96□□□□□ -2.26
RPT4P53549 YOR011W-AYOR011W-A 207 nt0.96□□□□□ -2.26
RPT4P53549 YMR160WYMR160W 2451 nt0.95□□□□□ -2.26
RPT4P53549 DBP6YNR038W 1890 nt0.95□□□□□ -2.26
RPT4P53549 YDR344CYDR344C 444 nt0.95□□□□□ -2.26
Retrieved 100 of 7,029 protein–RNA pairs in 54.1 ms