Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
CXCL12P48061 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CXCL12P48061 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.09■□□□□ 0.81
CXCL12P48061 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.09■□□□□ 0.81
CXCL12P48061 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.09■□□□□ 0.81
CXCL12P48061 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.09■□□□□ 0.81
CXCL12P48061 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL12P48061 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.08■□□□□ 0.81
CXCL12P48061 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CXCL12P48061 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CXCL12P48061 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.08■□□□□ 0.81
CXCL12P48061 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CXCL12P48061 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.08■□□□□ 0.81
CXCL12P48061 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.08■□□□□ 0.81
CXCL12P48061 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.08■□□□□ 0.81
CXCL12P48061 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.08■□□□□ 0.81
CXCL12P48061 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
CXCL12P48061 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CXCL12P48061 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CXCL12P48061 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CXCL12P48061 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.08■□□□□ 0.8
CXCL12P48061 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.08■□□□□ 0.8
CXCL12P48061 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CXCL12P48061 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL12P48061 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL12P48061 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL12P48061 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CXCL12P48061 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL12P48061 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
CXCL12P48061 EGLN1P1-201ENST00000531623 762 ntBASIC20.07■□□□□ 0.8
CXCL12P48061 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.07■□□□□ 0.8
CXCL12P48061 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.07■□□□□ 0.8
CXCL12P48061 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL12P48061 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL12P48061 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CXCL12P48061 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.07■□□□□ 0.8
CXCL12P48061 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL12P48061 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CXCL12P48061 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CXCL12P48061 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.06■□□□□ 0.8
CXCL12P48061 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CXCL12P48061 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.06■□□□□ 0.8
CXCL12P48061 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.06■□□□□ 0.8
CXCL12P48061 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.06■□□□□ 0.8
CXCL12P48061 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.06■□□□□ 0.8
CXCL12P48061 AC006011.2-201ENST00000621313 1158 ntBASIC20.06■□□□□ 0.8
CXCL12P48061 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.06■□□□□ 0.8
CXCL12P48061 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.06■□□□□ 0.8
CXCL12P48061 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.06■□□□□ 0.8
CXCL12P48061 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.06■□□□□ 0.8
CXCL12P48061 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CXCL12P48061 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CXCL12P48061 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.05■□□□□ 0.8
CXCL12P48061 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL12P48061 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL12P48061 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL12P48061 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.05■□□□□ 0.8
CXCL12P48061 ECEL1P2-202ENST00000465689 757 ntBASIC20.05■□□□□ 0.8
CXCL12P48061 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
CXCL12P48061 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.05■□□□□ 0.8
CXCL12P48061 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
CXCL12P48061 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CXCL12P48061 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CXCL12P48061 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL12P48061 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.04■□□□□ 0.8
CXCL12P48061 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL12P48061 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.04■□□□□ 0.8
CXCL12P48061 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.04■□□□□ 0.8
CXCL12P48061 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CXCL12P48061 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL12P48061 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL12P48061 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL12P48061 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL12P48061 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL12P48061 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms