Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
HNF4AP41235 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.46■□□□□ 0.71
HNF4AP41235 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.46■□□□□ 0.71
HNF4AP41235 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
HNF4AP41235 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.45■□□□□ 0.7
HNF4AP41235 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HNF4AP41235 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HNF4AP41235 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HNF4AP41235 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HNF4AP41235 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HNF4AP41235 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.45■□□□□ 0.7
HNF4AP41235 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HNF4AP41235 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HNF4AP41235 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.45■□□□□ 0.7
HNF4AP41235 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HNF4AP41235 AL121832.2-201ENST00000610979 668 ntBASIC19.45■□□□□ 0.7
HNF4AP41235 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.45■□□□□ 0.7
HNF4AP41235 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HNF4AP41235 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HNF4AP41235 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HNF4AP41235 MKRN4P-201ENST00000444706 1521 ntBASIC19.45■□□□□ 0.7
HNF4AP41235 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.45■□□□□ 0.7
HNF4AP41235 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HNF4AP41235 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.44■□□□□ 0.7
HNF4AP41235 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HNF4AP41235 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HNF4AP41235 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HNF4AP41235 AL512625.2-201ENST00000417533 625 ntBASIC19.44■□□□□ 0.7
HNF4AP41235 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
HNF4AP41235 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.44■□□□□ 0.7
HNF4AP41235 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HNF4AP41235 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.44■□□□□ 0.7
HNF4AP41235 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
HNF4AP41235 CYP2T3P-201ENST00000601990 817 ntBASIC19.44■□□□□ 0.7
HNF4AP41235 AC105020.6-201ENST00000621523 1217 ntBASIC19.44■□□□□ 0.7
HNF4AP41235 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.44■□□□□ 0.7
HNF4AP41235 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HNF4AP41235 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HNF4AP41235 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.44■□□□□ 0.7
HNF4AP41235 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.43■□□□□ 0.7
HNF4AP41235 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HNF4AP41235 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.43■□□□□ 0.7
HNF4AP41235 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.43■□□□□ 0.7
HNF4AP41235 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HNF4AP41235 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HNF4AP41235 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.43■□□□□ 0.7
HNF4AP41235 GPX1P1-201ENST00000388829 606 ntBASIC19.43■□□□□ 0.7
HNF4AP41235 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.43■□□□□ 0.7
HNF4AP41235 NCF1B-203ENST00000435988 1254 ntBASIC19.43■□□□□ 0.7
HNF4AP41235 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.43■□□□□ 0.7
HNF4AP41235 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.43■□□□□ 0.7
HNF4AP41235 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HNF4AP41235 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HNF4AP41235 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HNF4AP41235 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HNF4AP41235 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
HNF4AP41235 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.42■□□□□ 0.7
HNF4AP41235 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.42■□□□□ 0.7
HNF4AP41235 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.42■□□□□ 0.7
HNF4AP41235 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HNF4AP41235 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HNF4AP41235 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.42■□□□□ 0.7
HNF4AP41235 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.41■□□□□ 0.7
HNF4AP41235 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.41■□□□□ 0.7
HNF4AP41235 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HNF4AP41235 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.41■□□□□ 0.7
HNF4AP41235 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HNF4AP41235 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
HNF4AP41235 BX276092.2-201ENST00000417668 665 ntBASIC19.41■□□□□ 0.7
HNF4AP41235 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.41■□□□□ 0.7
HNF4AP41235 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms