Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
SHMT2P34897 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SHMT2P34897 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SHMT2P34897 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHMT2P34897 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHMT2P34897 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SHMT2P34897 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.64■□□□□ 0.73
SHMT2P34897 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.64■□□□□ 0.73
SHMT2P34897 CD99P1-205ENST00000527459 561 ntBASIC19.64■□□□□ 0.73
SHMT2P34897 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.64■□□□□ 0.73
SHMT2P34897 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.64■□□□□ 0.73
SHMT2P34897 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHMT2P34897 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHMT2P34897 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHMT2P34897 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.64■□□□□ 0.73
SHMT2P34897 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHMT2P34897 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SHMT2P34897 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHMT2P34897 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SHMT2P34897 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.63■□□□□ 0.73
SHMT2P34897 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.63■□□□□ 0.73
SHMT2P34897 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
SHMT2P34897 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.63■□□□□ 0.73
SHMT2P34897 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SHMT2P34897 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.63■□□□□ 0.73
SHMT2P34897 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.63■□□□□ 0.73
SHMT2P34897 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.63■□□□□ 0.73
SHMT2P34897 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.63■□□□□ 0.73
SHMT2P34897 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHMT2P34897 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.63■□□□□ 0.73
SHMT2P34897 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SHMT2P34897 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.62■□□□□ 0.73
SHMT2P34897 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHMT2P34897 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.62■□□□□ 0.73
SHMT2P34897 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SHMT2P34897 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHMT2P34897 RNA5SP413-201ENST00000516373 109 ntBASIC19.62■□□□□ 0.73
SHMT2P34897 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHMT2P34897 HLA-B-256ENST00000639848 1089 ntBASIC19.62■□□□□ 0.73
SHMT2P34897 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHMT2P34897 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHMT2P34897 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.62■□□□□ 0.73
SHMT2P34897 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHMT2P34897 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SHMT2P34897 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
SHMT2P34897 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
SHMT2P34897 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.61■□□□□ 0.73
SHMT2P34897 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SHMT2P34897 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.61■□□□□ 0.73
SHMT2P34897 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
SHMT2P34897 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SHMT2P34897 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.61■□□□□ 0.73
SHMT2P34897 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.61■□□□□ 0.73
SHMT2P34897 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.61■□□□□ 0.73
SHMT2P34897 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.61■□□□□ 0.73
SHMT2P34897 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.61■□□□□ 0.73
SHMT2P34897 AC060766.5-201ENST00000590539 871 ntBASIC19.61■□□□□ 0.73
SHMT2P34897 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
SHMT2P34897 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
SHMT2P34897 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SHMT2P34897 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.61■□□□□ 0.73
SHMT2P34897 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHMT2P34897 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.6■□□□□ 0.73
SHMT2P34897 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.6■□□□□ 0.73
SHMT2P34897 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHMT2P34897 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.6■□□□□ 0.73
SHMT2P34897 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHMT2P34897 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SHMT2P34897 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.59■□□□□ 0.73
SHMT2P34897 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.59■□□□□ 0.73
SHMT2P34897 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms