Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC4P09017 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.67■□□□□ 0.74
HOXC4P09017 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC4P09017 RARRES2P10-201ENST00000564312 460 ntBASIC19.67■□□□□ 0.74
HOXC4P09017 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC4P09017 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.67■□□□□ 0.74
HOXC4P09017 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC4P09017 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC4P09017 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.67■□□□□ 0.74
HOXC4P09017 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC4P09017 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
HOXC4P09017 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
HOXC4P09017 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC4P09017 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.66■□□□□ 0.74
HOXC4P09017 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXC4P09017 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXC4P09017 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXC4P09017 AC233702.5-201ENST00000584107 538 ntBASIC19.66■□□□□ 0.74
HOXC4P09017 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC4P09017 KRT16P6-202ENST00000425692 1426 ntBASIC19.66■□□□□ 0.74
HOXC4P09017 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXC4P09017 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC4P09017 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC4P09017 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXC4P09017 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HOXC4P09017 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HOXC4P09017 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC4P09017 RPS2P55-201ENST00000397318 883 ntBASIC19.65■□□□□ 0.74
HOXC4P09017 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 AL596275.1-201ENST00000423464 877 ntBASIC19.65■□□□□ 0.74
HOXC4P09017 KRT16P5-201ENST00000455284 522 ntBASIC19.65■□□□□ 0.74
HOXC4P09017 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 AC107956.1-201ENST00000494359 873 ntBASIC19.65■□□□□ 0.74
HOXC4P09017 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.65■□□□□ 0.74
HOXC4P09017 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC4P09017 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC4P09017 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.65■□□□□ 0.74
HOXC4P09017 AP001412.1-201ENST00000608405 714 ntBASIC19.65■□□□□ 0.74
HOXC4P09017 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC4P09017 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HOXC4P09017 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 CLDN5-201ENST00000403084 2357 ntBASIC19.65■□□□□ 0.74
HOXC4P09017 NBPF21P-201ENST00000425093 1451 ntBASIC19.65■□□□□ 0.74
HOXC4P09017 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC4P09017 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC4P09017 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC4P09017 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.64■□□□□ 0.74
HOXC4P09017 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC4P09017 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
HOXC4P09017 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC4P09017 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
HOXC4P09017 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.64■□□□□ 0.73
HOXC4P09017 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HOXC4P09017 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC4P09017 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC4P09017 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HOXC4P09017 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC4P09017 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC4P09017 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
HOXC4P09017 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC4P09017 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
HOXC4P09017 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXC4P09017 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HOXC4P09017 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.63■□□□□ 0.73
HOXC4P09017 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.63■□□□□ 0.73
HOXC4P09017 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC4P09017 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.63■□□□□ 0.73
HOXC4P09017 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXC4P09017 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC4P09017 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC4P09017 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms