Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A2P08572 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A2P08572 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.4■□□□□ 0.86
COL4A2P08572 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.4■□□□□ 0.86
COL4A2P08572 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL4A2P08572 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
COL4A2P08572 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.39■□□□□ 0.86
COL4A2P08572 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A2P08572 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A2P08572 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A2P08572 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.39■□□□□ 0.86
COL4A2P08572 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.39■□□□□ 0.86
COL4A2P08572 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.39■□□□□ 0.85
COL4A2P08572 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.39■□□□□ 0.85
COL4A2P08572 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.39■□□□□ 0.85
COL4A2P08572 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 NAPSB-206ENST00000562112 1266 ntBASIC20.39■□□□□ 0.85
COL4A2P08572 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL4A2P08572 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A2P08572 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A2P08572 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A2P08572 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A2P08572 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A2P08572 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A2P08572 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A2P08572 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A2P08572 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
COL4A2P08572 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A2P08572 YBX1P10-201ENST00000444752 975 ntBASIC20.37■□□□□ 0.85
COL4A2P08572 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
COL4A2P08572 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A2P08572 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A2P08572 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A2P08572 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A2P08572 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A2P08572 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A2P08572 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A2P08572 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.36■□□□□ 0.85
COL4A2P08572 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A2P08572 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
COL4A2P08572 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.36■□□□□ 0.85
COL4A2P08572 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.36■□□□□ 0.85
COL4A2P08572 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A2P08572 DGCR10-201ENST00000609839 495 ntBASIC20.36■□□□□ 0.85
COL4A2P08572 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A2P08572 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.36■□□□□ 0.85
COL4A2P08572 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL4A2P08572 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A2P08572 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.36■□□□□ 0.85
COL4A2P08572 KRT8P20-201ENST00000423953 1409 ntBASIC20.36■□□□□ 0.85
COL4A2P08572 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 DUX4L26-201ENST00000489078 1255 ntBASIC20.36■□□□□ 0.85
COL4A2P08572 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A2P08572 C2orf69P3-201ENST00000565542 1120 ntBASIC20.36■□□□□ 0.85
COL4A2P08572 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
COL4A2P08572 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A2P08572 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
COL4A2P08572 CR392000.1-201ENST00000624770 1228 ntBASIC20.36■□□□□ 0.85
COL4A2P08572 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A2P08572 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
COL4A2P08572 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A2P08572 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A2P08572 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A2P08572 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A2P08572 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A2P08572 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A2P08572 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL4A2P08572 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
COL4A2P08572 AC005363.2-201ENST00000618631 242 ntBASIC20.35■□□□□ 0.85
COL4A2P08572 AC006011.2-201ENST00000621313 1158 ntBASIC20.35■□□□□ 0.85
COL4A2P08572 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A2P08572 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
COL4A2P08572 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A2P08572 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL4A2P08572 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A2P08572 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A2P08572 AL024507.2-201ENST00000606070 2574 ntBASIC20.34■□□□□ 0.85
COL4A2P08572 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A2P08572 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
COL4A2P08572 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms