Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CACNA1FO60840 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CACNA1FO60840 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CACNA1FO60840 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC25.41■■□□□ 1.66
CACNA1FO60840 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC25.41■■□□□ 1.66
CACNA1FO60840 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC25.41■■□□□ 1.66
CACNA1FO60840 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC25.41■■□□□ 1.66
CACNA1FO60840 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC25.41■■□□□ 1.66
CACNA1FO60840 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
CACNA1FO60840 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
CACNA1FO60840 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.4■■□□□ 1.66
CACNA1FO60840 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
CACNA1FO60840 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC25.4■■□□□ 1.66
CACNA1FO60840 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
CACNA1FO60840 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
CACNA1FO60840 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC25.4■■□□□ 1.66
CACNA1FO60840 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
CACNA1FO60840 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CACNA1FO60840 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CACNA1FO60840 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
CACNA1FO60840 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC25.4■■□□□ 1.66
CACNA1FO60840 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
CACNA1FO60840 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC25.39■■□□□ 1.66
CACNA1FO60840 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1FO60840 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1FO60840 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1FO60840 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1FO60840 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1FO60840 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1FO60840 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC25.39■■□□□ 1.66
CACNA1FO60840 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CACNA1FO60840 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.39■■□□□ 1.66
CACNA1FO60840 FAM197Y4-202ENST00000622692 608 ntBASIC25.39■■□□□ 1.66
CACNA1FO60840 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CACNA1FO60840 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC25.39■■□□□ 1.65
CACNA1FO60840 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CACNA1FO60840 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CACNA1FO60840 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC25.39■■□□□ 1.65
CACNA1FO60840 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
CACNA1FO60840 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
CACNA1FO60840 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC25.38■■□□□ 1.65
CACNA1FO60840 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
CACNA1FO60840 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC25.38■■□□□ 1.65
CACNA1FO60840 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
CACNA1FO60840 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CACNA1FO60840 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CACNA1FO60840 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC25.38■■□□□ 1.65
CACNA1FO60840 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC25.38■■□□□ 1.65
CACNA1FO60840 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CACNA1FO60840 AC239809.2-201ENST00000415381 517 ntBASIC25.38■■□□□ 1.65
CACNA1FO60840 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC25.38■■□□□ 1.65
CACNA1FO60840 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC25.38■■□□□ 1.65
CACNA1FO60840 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC25.38■■□□□ 1.65
CACNA1FO60840 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
CACNA1FO60840 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
CACNA1FO60840 KRT18P29-201ENST00000397031 1267 ntBASIC25.37■■□□□ 1.65
CACNA1FO60840 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
CACNA1FO60840 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC25.37■■□□□ 1.65
CACNA1FO60840 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
CACNA1FO60840 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
CACNA1FO60840 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC25.37■■□□□ 1.65
CACNA1FO60840 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CACNA1FO60840 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC25.37■■□□□ 1.65
CACNA1FO60840 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC25.36■■□□□ 1.65
CACNA1FO60840 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC25.36■■□□□ 1.65
CACNA1FO60840 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
CACNA1FO60840 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC25.36■■□□□ 1.65
CACNA1FO60840 HLA-G-202ENST00000376815 851 ntBASIC25.36■■□□□ 1.65
CACNA1FO60840 HLA-G-203ENST00000376818 1127 ntBASIC25.36■■□□□ 1.65
CACNA1FO60840 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC25.36■■□□□ 1.65
CACNA1FO60840 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 RHOD-202ENST00000532559 538 ntTSL 3 BASIC25.36■■□□□ 1.65
CACNA1FO60840 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.36■■□□□ 1.65
CACNA1FO60840 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
CACNA1FO60840 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
CACNA1FO60840 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CACNA1FO60840 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC25.35■■□□□ 1.65
CACNA1FO60840 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CACNA1FO60840 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CACNA1FO60840 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms