Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
MSH4O15457 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
MSH4O15457 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
MSH4O15457 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
MSH4O15457 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
MSH4O15457 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
MSH4O15457 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
MSH4O15457 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
MSH4O15457 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
MSH4O15457 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
MSH4O15457 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC22.6■■□□□ 1.21
MSH4O15457 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.6■■□□□ 1.21
MSH4O15457 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
MSH4O15457 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
MSH4O15457 AC124283.5-201ENST00000624661 1809 ntBASIC22.59■■□□□ 1.21
MSH4O15457 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.59■■□□□ 1.21
MSH4O15457 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
MSH4O15457 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC22.59■■□□□ 1.21
MSH4O15457 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
MSH4O15457 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC22.59■■□□□ 1.21
MSH4O15457 LINC01006-201ENST00000333319 2292 ntBASIC22.59■■□□□ 1.21
MSH4O15457 AL162377.1-201ENST00000618844 1793 ntBASIC22.58■■□□□ 1.21
MSH4O15457 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC22.58■■□□□ 1.21
MSH4O15457 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH4O15457 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC22.58■■□□□ 1.21
MSH4O15457 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MSH4O15457 KRT17P3-201ENST00000420566 1262 ntBASIC22.58■■□□□ 1.21
MSH4O15457 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.58■■□□□ 1.21
MSH4O15457 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC22.58■■□□□ 1.21
MSH4O15457 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MSH4O15457 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC22.58■■□□□ 1.21
MSH4O15457 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.58■■□□□ 1.21
MSH4O15457 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.58■■□□□ 1.21
MSH4O15457 AC069544.1-201ENST00000609399 999 ntBASIC22.58■■□□□ 1.21
MSH4O15457 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH4O15457 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC22.58■■□□□ 1.2
MSH4O15457 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH4O15457 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.58■■□□□ 1.2
MSH4O15457 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH4O15457 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.58■■□□□ 1.2
MSH4O15457 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH4O15457 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC22.58■■□□□ 1.2
MSH4O15457 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH4O15457 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.58■■□□□ 1.2
MSH4O15457 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
MSH4O15457 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
MSH4O15457 RPS2P52-201ENST00000469610 820 ntBASIC22.57■■□□□ 1.2
MSH4O15457 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH4O15457 MMD2-204ENST00000612910 778 ntTSL 5 BASIC22.57■■□□□ 1.2
MSH4O15457 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC22.57■■□□□ 1.2
MSH4O15457 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH4O15457 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH4O15457 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
MSH4O15457 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.56■■□□□ 1.2
MSH4O15457 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
MSH4O15457 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.56■■□□□ 1.2
MSH4O15457 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
MSH4O15457 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH4O15457 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms