Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP1O15259 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP1O15259 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP1O15259 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
NPHP1O15259 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
NPHP1O15259 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP1O15259 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP1O15259 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
NPHP1O15259 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP1O15259 PNN-205ENST00000556530 601 ntTSL 2 BASIC25.32■■□□□ 1.64
NPHP1O15259 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC25.32■■□□□ 1.64
NPHP1O15259 AC004264.1-201ENST00000608354 794 ntBASIC25.32■■□□□ 1.64
NPHP1O15259 AL121906.2-201ENST00000621597 723 ntBASIC25.32■■□□□ 1.64
NPHP1O15259 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP1O15259 AC011484.1-201ENST00000377652 1995 ntBASIC25.32■■□□□ 1.64
NPHP1O15259 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
NPHP1O15259 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
NPHP1O15259 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC25.31■■□□□ 1.64
NPHP1O15259 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
NPHP1O15259 AC023632.3-201ENST00000521633 145 ntBASIC25.31■■□□□ 1.64
NPHP1O15259 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC25.31■■□□□ 1.64
NPHP1O15259 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.31■■□□□ 1.64
NPHP1O15259 AL445228.2-201ENST00000605589 952 ntBASIC25.31■■□□□ 1.64
NPHP1O15259 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC25.31■■□□□ 1.64
NPHP1O15259 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP1O15259 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC25.31■■□□□ 1.64
NPHP1O15259 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC25.31■■□□□ 1.64
NPHP1O15259 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC25.3■■□□□ 1.64
NPHP1O15259 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
NPHP1O15259 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC25.3■■□□□ 1.64
NPHP1O15259 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC25.3■■□□□ 1.64
NPHP1O15259 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP1O15259 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC25.3■■□□□ 1.64
NPHP1O15259 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.3■■□□□ 1.64
NPHP1O15259 AC233723.2-201ENST00000623798 2106 ntBASIC25.3■■□□□ 1.64
NPHP1O15259 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
NPHP1O15259 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
NPHP1O15259 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC25.29■■□□□ 1.64
NPHP1O15259 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
NPHP1O15259 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
NPHP1O15259 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC25.29■■□□□ 1.64
NPHP1O15259 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.29■■□□□ 1.64
NPHP1O15259 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.29■■□□□ 1.64
NPHP1O15259 ARMC10P1-201ENST00000313754 855 ntBASIC25.29■■□□□ 1.64
NPHP1O15259 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
NPHP1O15259 AP002982.1-201ENST00000492365 877 ntBASIC25.29■■□□□ 1.64
NPHP1O15259 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC25.29■■□□□ 1.64
NPHP1O15259 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
NPHP1O15259 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC25.29■■□□□ 1.64
NPHP1O15259 AC073195.1-201ENST00000607241 877 ntBASIC25.29■■□□□ 1.64
NPHP1O15259 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.29■■□□□ 1.64
NPHP1O15259 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
NPHP1O15259 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC25.29■■□□□ 1.64
NPHP1O15259 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
NPHP1O15259 STAC-204ENST00000457375 1366 ntTSL 2 BASIC25.29■■□□□ 1.64
NPHP1O15259 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
NPHP1O15259 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
NPHP1O15259 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC25.28■■□□□ 1.64
NPHP1O15259 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
NPHP1O15259 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC25.28■■□□□ 1.64
NPHP1O15259 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
NPHP1O15259 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC25.28■■□□□ 1.64
NPHP1O15259 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC25.28■■□□□ 1.64
NPHP1O15259 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC25.28■■□□□ 1.64
NPHP1O15259 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
NPHP1O15259 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
NPHP1O15259 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC25.28■■□□□ 1.64
NPHP1O15259 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC25.28■■□□□ 1.64
NPHP1O15259 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
NPHP1O15259 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
NPHP1O15259 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
NPHP1O15259 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.27■■□□□ 1.64
NPHP1O15259 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
NPHP1O15259 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
NPHP1O15259 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
NPHP1O15259 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
NPHP1O15259 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC25.27■■□□□ 1.64
NPHP1O15259 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.27■■□□□ 1.64
NPHP1O15259 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
NPHP1O15259 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.27■■□□□ 1.64
NPHP1O15259 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC25.27■■□□□ 1.64
NPHP1O15259 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC25.27■■□□□ 1.64
NPHP1O15259 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.27■■□□□ 1.64
NPHP1O15259 MIR6786-201ENST00000616843 113 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms