Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGN4O00479 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGN4O00479 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGN4O00479 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGN4O00479 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGN4O00479 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGN4O00479 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGN4O00479 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGN4O00479 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGN4O00479 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.69■□□□□ 0.58
HMGN4O00479 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HMGN4O00479 AC105020.6-201ENST00000621523 1217 ntBASIC18.69■□□□□ 0.58
HMGN4O00479 AC231657.2-201ENST00000624556 255 ntBASIC18.69■□□□□ 0.58
HMGN4O00479 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGN4O00479 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGN4O00479 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGN4O00479 AC007952.6-201ENST00000573168 2673 ntBASIC18.69■□□□□ 0.58
HMGN4O00479 AC003957.1-201ENST00000625108 2673 ntBASIC18.69■□□□□ 0.58
HMGN4O00479 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGN4O00479 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HMGN4O00479 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGN4O00479 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGN4O00479 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGN4O00479 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 KRT18P68-201ENST00000392293 1000 ntBASIC18.68■□□□□ 0.58
HMGN4O00479 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGN4O00479 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGN4O00479 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGN4O00479 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HMGN4O00479 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.68■□□□□ 0.58
HMGN4O00479 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGN4O00479 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.68■□□□□ 0.58
HMGN4O00479 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGN4O00479 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGN4O00479 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HMGN4O00479 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGN4O00479 AL158211.5-201ENST00000623583 2518 ntBASIC18.67■□□□□ 0.58
HMGN4O00479 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGN4O00479 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGN4O00479 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HMGN4O00479 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 AC007322.1-201ENST00000426983 750 ntBASIC18.67■□□□□ 0.58
HMGN4O00479 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 CYP2T3P-201ENST00000601990 817 ntBASIC18.67■□□□□ 0.58
HMGN4O00479 AC069236.1-201ENST00000604339 616 ntBASIC18.67■□□□□ 0.58
HMGN4O00479 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGN4O00479 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGN4O00479 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGN4O00479 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGN4O00479 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.66■□□□□ 0.58
HMGN4O00479 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGN4O00479 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGN4O00479 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HMGN4O00479 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGN4O00479 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGN4O00479 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGN4O00479 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGN4O00479 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
HMGN4O00479 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGN4O00479 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGN4O00479 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HMGN4O00479 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HMGN4O00479 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGN4O00479 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 AL355472.2-201ENST00000422958 438 ntBASIC18.65■□□□□ 0.58
HMGN4O00479 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 AC022517.1-201ENST00000592429 346 ntBASIC18.65■□□□□ 0.58
HMGN4O00479 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGN4O00479 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGN4O00479 AC008694.1-202ENST00000636953 945 ntBASIC18.65■□□□□ 0.58
HMGN4O00479 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGN4O00479 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 KRT8P17-201ENST00000453110 1448 ntBASIC18.65■□□□□ 0.58
HMGN4O00479 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGN4O00479 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HMGN4O00479 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGN4O00479 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms