Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 TSPY5P-201ENST00000426936 936 ntBASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 AL445675.2-201ENST00000620291 557 ntBASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 AC246785.2-201ENST00000432512 513 ntBASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 AC139887.4-201ENST00000607877 719 ntBASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
COL6A6A6NMZ7 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 MESTP1-201ENST00000404287 994 ntBASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 AC097488.1-201ENST00000507834 756 ntBASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.18■□□□□ 0.5
COL6A6A6NMZ7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A6A6NMZ7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 PVRIG2P-201ENST00000435460 978 ntBASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 AC011506.1-201ENST00000474329 610 ntBASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 AC128688.1-201ENST00000487626 519 ntBASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 AL359075.1-203ENST00000462729 1002 ntBASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 AC111152.3-201ENST00000569699 673 ntBASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 AC130371.2-201ENST00000619443 611 ntBASIC18.16■□□□□ 0.5
COL6A6A6NMZ7 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms