Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 LARGE-AS1-203ENST00000438159 2618 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 RNA5SP260-201ENST00000363849 111 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 OR7E36P-201ENST00000419933 954 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 GAPDHP55-201ENST00000423136 803 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 FTH1P20-201ENST00000434913 548 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 LIN28AP2-201ENST00000445283 458 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 TAAR3P-201ENST00000466706 1078 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 TAAR3P-202ENST00000481759 1025 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AF279873.3-204ENST00000523336 784 ntTSL 2 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 CLEC4E-206ENST00000545274 730 ntTSL 3 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AC006120.1-201ENST00000579375 546 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AC139795.3-201ENST00000606358 541 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AL034408.1-201ENST00000637712 664 ntBASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 SCG3-201ENST00000220478 3315 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 CYP39A1-201ENST00000275016 2176 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 MELK-207ENST00000536860 2342 ntTSL 2 BASIC6.93□□□□□ -1.3
C9orf40Q8IXQ3 ZNF410-205ENST00000442160 2076 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 WASF5P-205ENST00000428639 1455 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AP000766.1-201ENST00000561746 4140 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 SAMMSON-203ENST00000641005 2168 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 RPSAP44-201ENST00000406712 884 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC020983.1-201ENST00000417063 543 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AL022100.1-202ENST00000421214 548 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC009495.3-201ENST00000425688 779 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 MIR4435-2HG-205ENST00000431385 843 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 SS18L2P1-201ENST00000445923 213 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC120057.1-201ENST00000483947 663 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC079944.1-201ENST00000485426 495 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC009153.1-201ENST00000485799 496 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 RN7SL182P-201ENST00000496499 300 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 ENPP7P3-201ENST00000509123 241 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 IGKV2-29-201ENST00000521304 372 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 ACYP1-204ENST00000555135 639 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 TMX3-204ENST00000562706 937 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 FRG2IP-201ENST00000563581 781 ntBASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 ZNF561-AS1-208ENST00000592851 782 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC6.92□□□□□ -1.3
C9orf40Q8IXQ3 C5orf56-207ENST00000621237 486 ntAPPRIS P5 TSL 2 BASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms