Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 C2orf69P4-201ENST00000565394 541 ntBASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 AC112907.3-201ENST00000577781 2400 ntBASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
AP4E1Q9UPM8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
AP4E1Q9UPM8 PTBP1P-201ENST00000554374 1601 ntBASIC20.89■□□□□ 0.94
AP4E1Q9UPM8 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
AP4E1Q9UPM8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
AP4E1Q9UPM8 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 SLC25A24-204ENST00000569674 2357 ntBASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP4E1Q9UPM8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
AP4E1Q9UPM8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 PCDHAC2-203ENST00000615316 3011 ntBASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.86■□□□□ 0.93
AP4E1Q9UPM8 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 BX119927.1-201ENST00000636596 1552 ntBASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AP4E1Q9UPM8 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms