Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 PARN-205ENST00000539279 1557 ntTSL 2 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 MOK-233ENST00000524214 1539 ntTSL 2 BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC38.4■■■■□ 3.74
SHROOM4Q9ULL8 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 AF106564.1-201ENST00000607058 2553 ntBASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 REXO1L10P-201ENST00000615707 1290 ntBASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC38.39■■■■□ 3.74
SHROOM4Q9ULL8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC38.38■■■■□ 3.74
SHROOM4Q9ULL8 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC38.38■■■■□ 3.73
SHROOM4Q9ULL8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC38.38■■■■□ 3.73
SHROOM4Q9ULL8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC38.38■■■■□ 3.73
SHROOM4Q9ULL8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC38.38■■■■□ 3.73
SHROOM4Q9ULL8 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC38.38■■■■□ 3.73
SHROOM4Q9ULL8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
SHROOM4Q9ULL8 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC38.38■■■■□ 3.73
SHROOM4Q9ULL8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 AL031963.3-201ENST00000606441 850 ntBASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC38.37■■■■□ 3.73
SHROOM4Q9ULL8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 UNC93B2-201ENST00000285383 730 ntBASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 Six3os1_6.1-201ENST00000620790 196 ntBASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC38.36■■■■□ 3.73
SHROOM4Q9ULL8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 AC011484.1-201ENST00000377652 1995 ntBASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 HTR7P1-201ENST00000538670 1336 ntBASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 NTF6B-201ENST00000591913 560 ntBASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 AP000525.1-201ENST00000608286 694 ntBASIC38.35■■■■□ 3.73
SHROOM4Q9ULL8 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC38.34■■■■□ 3.73
SHROOM4Q9ULL8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC38.33■■■■□ 3.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms