Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 PNN-205ENST00000556530 601 ntTSL 2 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 NBPF21P-201ENST00000425093 1451 ntBASIC23.87■■□□□ 1.41
DDX4Q9NQI0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
DDX4Q9NQI0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC23.86■■□□□ 1.41
DDX4Q9NQI0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.86■■□□□ 1.41
DDX4Q9NQI0 AL355075.4-201ENST00000554988 638 ntBASIC23.86■■□□□ 1.41
DDX4Q9NQI0 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC23.86■■□□□ 1.41
DDX4Q9NQI0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
DDX4Q9NQI0 AP001412.1-201ENST00000608405 714 ntBASIC23.86■■□□□ 1.41
DDX4Q9NQI0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
DDX4Q9NQI0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.86■■□□□ 1.41
DDX4Q9NQI0 KRT17P2-201ENST00000300992 1314 ntBASIC23.85■■□□□ 1.41
DDX4Q9NQI0 HTR7P1-201ENST00000538670 1336 ntBASIC23.85■■□□□ 1.41
DDX4Q9NQI0 FP700111.2-201ENST00000619190 1892 ntBASIC23.85■■□□□ 1.41
DDX4Q9NQI0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 SAPCD2P4-201ENST00000424595 1171 ntBASIC23.85■■□□□ 1.41
DDX4Q9NQI0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
DDX4Q9NQI0 AC005229.4-201ENST00000610085 2198 ntBASIC23.85■■□□□ 1.41
DDX4Q9NQI0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 KRT16P5-201ENST00000455284 522 ntBASIC23.84■■□□□ 1.41
DDX4Q9NQI0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 MIR4785-201ENST00000585005 73 ntBASIC23.84■■□□□ 1.41
DDX4Q9NQI0 AL121906.2-201ENST00000621597 723 ntBASIC23.84■■□□□ 1.41
DDX4Q9NQI0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX4Q9NQI0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 AF186192.3-201ENST00000583427 947 ntBASIC23.83■■□□□ 1.41
DDX4Q9NQI0 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
DDX4Q9NQI0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX4Q9NQI0 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms